Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   J4N39_RS02385 Genome accession   NZ_CP071848
Coordinates   468866..469381 (+) Length   171 a.a.
NCBI ID   WP_252021572.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43136     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 463866..474381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N39_RS02375 (J4N39_02375) gshA 466639..468204 (+) 1566 WP_252021569.1 glutamate--cysteine ligase -
  J4N39_RS02380 (J4N39_02380) - 468209..468829 (+) 621 WP_252021571.1 hypothetical protein -
  J4N39_RS02385 (J4N39_02385) luxS 468866..469381 (+) 516 WP_252021572.1 S-ribosylhomocysteine lyase Regulator
  J4N39_RS02390 (J4N39_02390) - 469580..470842 (-) 1263 WP_252021574.1 CNNM domain-containing protein -
  J4N39_RS02395 (J4N39_02395) - 470930..471724 (-) 795 WP_252021576.1 inner membrane protein YpjD -
  J4N39_RS02400 (J4N39_02400) ffh 471884..473275 (+) 1392 WP_252021578.1 signal recognition particle protein -
  J4N39_RS02405 (J4N39_02405) rpsP 473686..473934 (+) 249 WP_252021580.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18982.79 Da        Isoelectric Point: 4.6291

>NTDB_id=548283 J4N39_RS02385 WP_252021572.1 468866..469381(+) (luxS) [Vibrio sp. SCSIO 43136]
MPLLDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFCVPNEQILSEKGIHTLEHLYAGFMRAHLNGSDVEIIDISP
MGCRTGFYMSLIGTPQESQVAQAWLAAMEDVLKVEDQNKIPELNEYQCGTAAMHSLEEAQEIAKGIIDAGIQVNKNDELA
LPESMLKELKV

Nucleotide


Download         Length: 516 bp        

>NTDB_id=548283 J4N39_RS02385 WP_252021572.1 468866..469381(+) (luxS) [Vibrio sp. SCSIO 43136]
ATGCCACTTTTAGACAGTTTCACCGTCGATCACACTCGTATGCACGCACCTGCTGTGCGTGTGGCAAAAACAATGCAAAC
CCCAAAAGGCGACACCATTACTGTCTTCGACCTGCGTTTTTGCGTTCCCAATGAACAAATTTTGTCTGAGAAAGGCATTC
ACACCTTAGAACACCTATATGCAGGCTTCATGCGCGCCCATCTAAATGGTAGTGACGTTGAGATCATCGATATTTCTCCT
ATGGGTTGTCGTACCGGTTTCTACATGAGCCTGATTGGCACACCACAAGAGTCTCAGGTTGCGCAAGCTTGGTTAGCAGC
GATGGAAGATGTACTTAAGGTCGAAGACCAAAATAAGATCCCTGAACTAAATGAGTACCAGTGTGGTACCGCAGCGATGC
ACTCGCTGGAAGAAGCACAAGAAATCGCTAAAGGCATCATCGATGCTGGCATCCAAGTGAATAAGAACGATGAGCTAGCA
TTGCCTGAGTCGATGTTGAAAGAGCTTAAAGTTTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

86.55

100

0.866