Detailed information NTG0548280

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: J4N39_RS02240
• Genome accession: NZ_CP071848
• Coordinates: 437795..438784 (+)
• Length: 329 a.a.
• NCBI ID: WP_252021531.1
• Uniprot ID: -
• Organism: Vibrio sp. SCSIO 43136
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 432795..443784

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J4N39_RS02205 (J4N39_02205)	ftsB	432823..433110 (+)	288	WP_252021523.1	cell division protein FtsB	-
J4N39_RS02210 (J4N39_02210)	ispD	433120..433836 (+)	717	WP_252021524.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
J4N39_RS02215 (J4N39_02215)	ispF	433840..434325 (+)	486	WP_252021525.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
J4N39_RS02220 (J4N39_02220)	truD	434322..435371 (+)	1050	WP_252021526.1	tRNA pseudouridine(13) synthase TruD	-
J4N39_RS02225 (J4N39_02225)	surE	435375..436133 (+)	759	WP_252021527.1	5'/3'-nucleotidase SurE	-
J4N39_RS02230 (J4N39_02230)	-	436136..436762 (+)	627	WP_252021528.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
J4N39_RS02235 (J4N39_02235)	-	436774..437736 (+)	963	WP_252021529.1	peptidoglycan DD-metalloendopeptidase family protein	-
J4N39_RS02240 (J4N39_02240)	rpoS	437795..438784 (+)	990	WP_252021531.1	RNA polymerase sigma factor RpoS	Regulator
J4N39_RS02245 (J4N39_02245)	mutS	438837..441395 (-)	2559	WP_252021532.1	DNA mismatch repair protein MutS	-
J4N39_RS02250 (J4N39_02250)	-	441679..442302 (+)	624	WP_252021534.1	DUF1449 domain-containing protein	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37863.77 Da
• Isoelectric Point: 4.7357

>NTDB_id=548280 J4N39_RS02240 WP_252021531.1 437795..438784(+) (rpoS) [Vibrio sp. SCSIO 43136]
MSISNAVTKVEEEFDLNLAQQENSDFDQRSNQTSAKASETKEEFEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAHQLDKPVEDVSKMLRLNERISSVDTPIGGESDKALLDIIPDVNNS
DPEVCTQDDDIKHSLINWLDDLNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVKQGLNM
ESLFNVEDE

Nucleotide

• Length: 990 bp

>NTDB_id=548280 J4N39_RS02240 WP_252021531.1 437795..438784(+) (rpoS) [Vibrio sp. SCSIO 43136]
ATGAGTATCAGCAATGCAGTCACTAAAGTCGAAGAAGAGTTTGATTTAAATCTTGCGCAGCAAGAAAACTCAGACTTTGA
TCAACGAAGCAATCAAACGTCAGCCAAAGCATCAGAAACAAAAGAAGAGTTCGAAGTAACCTCAAAAAGTCTTGATGCGA
CTCAACTATATCTAGGTGAAATCGGTTTTTCTCCGCTACTTACTGCGGAAGAAGAAGTGCTTTATGCTCGTCGAGCGCTA
CGGGGAGATGAAGCAGCCCGCAAACGTATGATCGAAAGTAACTTACGTTTGGTGGTGAAAATTTCACGCCGCTACAGCAA
CCGAGGTCTTGCTCTATTGGATCTGATCGAAGAGGGTAATCTAGGATTGATTCGTGCGGTAGAGAAGTTTGATCCTGAAC
GCGGTTTCCGGTTCTCAACCTACGCCACTTGGTGGATTCGCCAGACGATTGAACGTGCTTTGATGAATCAAACTCGTACG
ATTCGCCTTCCAATTCATGTCGTTAAAGAACTGAATATTTATCTGCGTACTGCTCGCGAATTGTCGCAAAAGCTTGATCA
CGAGCCAACGGCGGAAGAAATTGCTCACCAGCTTGATAAACCAGTCGAAGATGTTAGCAAAATGCTGCGTTTGAACGAGC
GAATTAGCTCGGTGGATACACCCATTGGTGGAGAAAGCGACAAAGCCTTGCTTGATATCATTCCTGATGTGAACAATTCA
GATCCTGAAGTTTGCACCCAAGATGATGACATTAAACACTCTTTAATCAATTGGTTAGACGATCTTAATCCTAAGCAGAA
AGAAGTTTTAGCACGCCGTTTTGGTCTGCTGGGTTATGAGCCGTCAACACTTGAAGAAGTTGGGCGTGAAATCAACCTAA
CTCGTGAACGTGTGCGTCAGATCCAAGTCGAAGGTTTACGCCGACTAAGAGAAATCTTAGTTAAACAAGGCCTGAACATG
GAATCGCTTTTCAATGTTGAAGACGAATAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	82.229	100	0.83