Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   J4N39_RS01095 Genome accession   NZ_CP071848
Coordinates   222647..223651 (-) Length   334 a.a.
NCBI ID   WP_252021182.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43136     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 217647..228651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N39_RS01070 (J4N39_01070) - 218097..219014 (-) 918 WP_252021177.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  J4N39_RS01075 (J4N39_01075) hslU 219157..220491 (-) 1335 WP_252021178.1 HslU--HslV peptidase ATPase subunit -
  J4N39_RS01080 (J4N39_01080) hslV 220505..221041 (-) 537 WP_252021179.1 ATP-dependent protease subunit HslV -
  J4N39_RS01085 (J4N39_01085) - 221205..221984 (+) 780 WP_252021180.1 MBL fold metallo-hydrolase -
  J4N39_RS01090 (J4N39_01090) - 222008..222547 (-) 540 WP_252021181.1 SPOR domain-containing protein -
  J4N39_RS01095 (J4N39_01095) cytR 222647..223651 (-) 1005 WP_252021182.1 DNA-binding transcriptional regulator CytR Regulator
  J4N39_RS01100 (J4N39_01100) priA 223917..226121 (-) 2205 WP_252021184.1 primosomal protein N' -
  J4N39_RS01105 (J4N39_01105) rpmE 226371..226589 (+) 219 WP_252021187.1 50S ribosomal protein L31 -
  J4N39_RS01110 (J4N39_01110) - 226814..228073 (+) 1260 WP_252021199.1 malic enzyme-like NAD(P)-binding protein -
  J4N39_RS01115 (J4N39_01115) metJ 228140..228460 (-) 321 WP_252021202.1 met regulon transcriptional regulator MetJ -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36780.15 Da        Isoelectric Point: 6.2466

>NTDB_id=548273 J4N39_RS01095 WP_252021182.1 222647..223651(-) (cytR) [Vibrio sp. SCSIO 43136]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYAPNSLARNLRRNESKTIVTIVPDICDSYFSEIIRG
IEDAAVEHGYLVLLGNSGQQEKRESSLVNLVFTKQADGMLLLGTQLPFDVSKPEQKNLPPLVMGCEFAPELELPTVHIDN
LTSSFEAVNYLTQMGHRHVAQLKGPENTQLCHFRNQGYQQALRRAGITMNPDYQVEGDFSFESGEAAAAQLLSLPEPPTA
VFCHNDVMAIGAIQKAKQMGKKVPEEISFVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMLLEILKGRDVRAGSRLLD
TKLVVRKSACPPRA

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=548273 J4N39_RS01095 WP_252021182.1 222647..223651(-) (cytR) [Vibrio sp. SCSIO 43136]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGCGTATCCACGGCTACCGTATCTCGGGCGTTAATGAACCCTGAGAA
AGTCTCATCTTCAACTCGCAAACGCGTTGAAGATGCGGTACTTGAAGCGGGCTACGCACCTAACTCATTAGCACGTAATT
TGCGTCGCAACGAATCTAAAACGATTGTTACTATCGTTCCAGATATTTGTGACTCTTACTTCAGCGAAATCATCCGAGGG
ATTGAAGATGCCGCTGTCGAACACGGCTATCTCGTTCTGCTCGGTAACAGCGGACAACAAGAAAAGCGTGAAAGCTCCTT
AGTCAATCTGGTGTTTACCAAACAGGCCGATGGCATGCTACTGCTAGGGACCCAACTACCATTTGACGTCAGTAAGCCTG
AACAAAAGAACCTACCACCACTGGTGATGGGGTGTGAGTTTGCGCCAGAGCTTGAGCTGCCAACAGTTCATATCGATAAC
CTGACCTCTTCATTTGAAGCGGTTAACTATCTGACCCAAATGGGGCATCGACACGTCGCCCAACTCAAAGGGCCAGAAAA
TACTCAGCTTTGCCACTTTCGTAACCAAGGCTACCAACAAGCCCTTAGGCGCGCTGGCATTACCATGAACCCTGATTATC
AGGTTGAAGGGGACTTTAGCTTTGAGTCTGGAGAAGCCGCTGCGGCGCAGCTACTTTCCCTGCCTGAGCCACCAACAGCG
GTCTTTTGCCACAATGACGTCATGGCTATCGGTGCCATTCAAAAAGCCAAGCAAATGGGTAAAAAAGTACCTGAAGAGAT
CTCTTTTGTCGGCTTTGATGACATTCAGTTCGCTCAGTATTGCGATCCACCGTTGACAACCATTTCGCAGCCTCGCTATG
AGATTGGTCGCCAAGCGATGTTGATGCTGCTCGAAATTCTAAAAGGACGCGATGTACGTGCGGGTTCTAGATTGCTCGAT
ACTAAATTGGTGGTCAGAAAAAGTGCCTGTCCCCCAAGGGCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

83.133

99.401

0.826
  cytR Vibrio parahaemolyticus RIMD 2210633

81.982

99.701

0.817