Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   LSP17_RS15905 Genome accession   NZ_CP089062
Coordinates   3430757..3431113 (+) Length   118 a.a.
NCBI ID   WP_003091119.1    Uniprot ID   A0A0H2ZD30
Organism   Pseudomonas aeruginosa strain UNC_PaerCF38     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3425757..3436113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSP17_RS15880 (LSP17_15880) fabF 3425969..3427213 (+) 1245 WP_003104132.1 beta-ketoacyl-ACP synthase II -
  LSP17_RS15885 (LSP17_15885) pabC 3427213..3428028 (+) 816 WP_003110198.1 aminodeoxychorismate lyase -
  LSP17_RS15890 (LSP17_15890) mltG 3428034..3429083 (+) 1050 WP_003104128.1 endolytic transglycosylase MltG -
  LSP17_RS15895 (LSP17_15895) tmk 3429112..3429744 (+) 633 WP_003091125.1 dTMP kinase -
  LSP17_RS15900 (LSP17_15900) - 3429737..3430723 (+) 987 WP_003110200.1 DNA polymerase III subunit delta' -
  LSP17_RS15905 (LSP17_15905) pilZ 3430757..3431113 (+) 357 WP_003091119.1 PilZ domain-containing protein Machinery gene
  LSP17_RS15910 (LSP17_15910) - 3431128..3431904 (+) 777 WP_003091117.1 TatD family hydrolase -
  LSP17_RS15915 (LSP17_15915) - 3432130..3433263 (-) 1134 WP_074227658.1 aminotransferase class V-fold PLP-dependent enzyme -
  LSP17_RS15920 (LSP17_15920) - 3433349..3433987 (+) 639 WP_003091114.1 TetR/AcrR family transcriptional regulator -
  LSP17_RS15925 (LSP17_15925) - 3434137..3435033 (+) 897 WP_003091113.1 radical SAM protein -
  LSP17_RS15930 (LSP17_15930) - 3435098..3435730 (+) 633 WP_003091112.1 DUF4823 domain-containing protein -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12903.98 Da        Isoelectric Point: 9.9969

>NTDB_id=548261 LSP17_RS15905 WP_003091119.1 3430757..3431113(+) (pilZ) [Pseudomonas aeruginosa strain UNC_PaerCF38]
MSLPPNLGPRNGILSLTIKDKSVLYAAYMPFIRNGGLFIPTNKNYKLGDEVFMLLNLMEEPEKIPVAGKVVWITPKGAQG
NRAAGIGVQFNDGDNTARNKIETYLAGALKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=548261 LSP17_RS15905 WP_003091119.1 3430757..3431113(+) (pilZ) [Pseudomonas aeruginosa strain UNC_PaerCF38]
ATGAGTTTGCCACCCAATCTGGGGCCGCGTAACGGCATCCTGTCCTTGACCATCAAGGACAAGTCCGTGCTTTACGCCGC
CTACATGCCGTTCATCAGGAACGGCGGGCTGTTCATTCCCACCAACAAGAACTACAAGCTTGGCGACGAGGTCTTCATGC
TGCTCAACCTGATGGAAGAGCCGGAGAAGATCCCGGTGGCCGGCAAGGTCGTCTGGATCACCCCGAAGGGCGCCCAGGGC
AACCGTGCGGCGGGCATCGGCGTGCAGTTCAACGACGGTGACAACACCGCCCGCAACAAGATCGAAACCTACCTGGCCGG
GGCGCTGAAGTCGGACCGGCCGACCCACACGATGTAA

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(17-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZD30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

49.074

91.525

0.449
  pilZ Legionella pneumophila strain ERS1305867

49.074

91.525

0.449