Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   J4N43_RS14360 Genome accession   NZ_CP071842
Coordinates   3095585..3096613 (+) Length   342 a.a.
NCBI ID   WP_254901949.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43009     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3090585..3101613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N43_RS14340 (J4N43_14245) rplC 3091147..3091776 (-) 630 WP_005379555.1 50S ribosomal protein L3 -
  J4N43_RS14345 (J4N43_14250) rpsJ 3091791..3092102 (-) 312 WP_004410492.1 30S ribosomal protein S10 -
  J4N43_RS14350 (J4N43_14255) rpmE 3092559..3092780 (-) 222 WP_005379546.1 50S ribosomal protein L31 -
  J4N43_RS14355 (J4N43_14260) priA 3093077..3095281 (+) 2205 WP_158159545.1 primosomal protein N' -
  J4N43_RS14360 (J4N43_14265) cytR 3095585..3096613 (+) 1029 WP_254901949.1 DNA-binding transcriptional regulator CytR Regulator
  J4N43_RS14365 (J4N43_14270) ftsN 3096839..3097387 (+) 549 WP_017820300.1 cell division protein FtsN -
  J4N43_RS14370 (J4N43_14275) hslV 3097503..3098054 (+) 552 WP_158159544.1 ATP-dependent protease subunit HslV -
  J4N43_RS14375 (J4N43_14280) hslU 3098078..3099409 (+) 1332 WP_047101881.1 HslU--HslV peptidase ATPase subunit -
  J4N43_RS14380 (J4N43_14285) - 3100202..3101119 (+) 918 WP_047101879.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 37765.46 Da        Isoelectric Point: 6.4948

>NTDB_id=548219 J4N43_RS14360 WP_254901949.1 3095585..3096613(+) (cytR) [Vibrio sp. SCSIO 43009]
MNERLKTMATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPY
FSEIIRGIEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELEL
PTVHIDNLTSAFEAVNYLTQLGHKRIAQISGPDTAILCQFRQQGYQQALRRAGINKDPQYSVITEFSFDGGAKAVRKLLE
LPEPPTAIFCHCDTMAIGAIQEAKKLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLEMLKGHDVH
SGSRLLETNLVIRGSAAPPQRP

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=548219 J4N43_RS14360 WP_254901949.1 3095585..3096613(+) (cytR) [Vibrio sp. SCSIO 43009]
ATAAATGAGAGGTTAAAAACTATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCTACGGCTACGGTATCTCG
AGCCTTAATGAATCCAGAGAAAGTCTCTTCTTCTACAAGAAAGAGAGTAGAAGATGCCGTACTTGAAGCGGGTTATTCTC
CAAACTCATTAGCGCGTAACTTACGTAGAAACGAATCAAAAACCATTGTTACTATCGTTCCCGACATCTGTGATCCTTAT
TTTTCTGAAATTATTCGCGGTATTGAAGATGCAGCCATGGAACATGGCTATCTAGTCCTGCTGGGCGATAGCGGACAACA
GAAGAAACGCGAAAGCTCTTTCGTTAACCTCGTATTTACTAAGCAGGCAGATGGAATGCTACTGCTTGGTACAGATCTAC
CATTCGATGTCAGTAAGCCAGAGCAAAAGAACTTACCTCCGATGGTAATGGCGTGTGAATTTGCGCCAGAGCTCGAGCTT
CCGACAGTACATATTGATAACCTGACCTCAGCATTTGAAGCGGTGAATTACCTGACTCAATTAGGTCATAAACGCATTGC
TCAAATCTCTGGACCAGATACAGCAATATTGTGTCAGTTCCGCCAGCAAGGCTACCAACAAGCCCTGCGCCGTGCCGGCA
TCAATAAAGATCCACAATATAGTGTCATTACTGAGTTCTCTTTTGATGGCGGAGCAAAAGCCGTTCGTAAACTGCTCGAA
TTGCCAGAACCACCAACGGCTATTTTCTGTCACTGTGACACAATGGCCATCGGCGCAATTCAAGAAGCGAAAAAGCTTGG
CTTACGAGTACCGCAAGATCTCTCTGTTGTGGGCTTTGATGACATTAACTTCGCTCAGTACTGCGATCCACCGTTGACCA
CCATCTCTCAACCTCGCTATGAGATTGGTCGACAAGCGATGCTAATGATGCTCGAGATGTTAAAAGGCCACGACGTGCAT
TCAGGCTCGCGTCTGCTTGAAACTAATCTCGTCATTCGTGGAAGTGCAGCGCCACCACAGCGTCCTTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(175-335)

Bacterial regulatory proteins, lacI family (LacI)

(10-55)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

97.935

99.123

0.971
  cytR Vibrio cholerae C6706

89.521

97.661

0.874