Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   J4N43_RS09000 Genome accession   NZ_CP071842
Coordinates   1915173..1916594 (+) Length   473 a.a.
NCBI ID   WP_017820876.1    Uniprot ID   A0A7Y0MUH5
Organism   Vibrio sp. SCSIO 43009     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1910173..1921594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N43_RS08980 (J4N43_08900) - 1910654..1911430 (-) 777 WP_158159810.1 adenosylcobinamide-GDP ribazoletransferase -
  J4N43_RS08985 (J4N43_08905) cobT 1911460..1912503 (-) 1044 WP_005377883.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  J4N43_RS08990 (J4N43_08910) - 1912752..1913441 (+) 690 WP_053350419.1 NAD(P)H-binding protein -
  J4N43_RS08995 (J4N43_08915) - 1913642..1915015 (+) 1374 WP_053350420.1 L-cystine transporter -
  J4N43_RS09000 (J4N43_08920) sbcB 1915173..1916594 (+) 1422 WP_017820876.1 exodeoxyribonuclease I Machinery gene
  J4N43_RS09005 (J4N43_08925) - 1916650..1917024 (+) 375 WP_005397786.1 CidA/LrgA family protein -
  J4N43_RS09010 (J4N43_08930) - 1917026..1917703 (+) 678 WP_005377888.1 LrgB family protein -
  J4N43_RS09015 (J4N43_08935) cdd 1918134..1919021 (+) 888 WP_053350421.1 cytidine deaminase -
  J4N43_RS09020 (J4N43_08940) purT 1919165..1920340 (+) 1176 WP_021033842.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  J4N43_RS09025 (J4N43_08945) - 1920413..1921063 (-) 651 WP_021707633.1 thiopurine S-methyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54446.62 Da        Isoelectric Point: 4.8633

>NTDB_id=548209 J4N43_RS09000 WP_017820876.1 1915173..1916594(+) (sbcB) [Vibrio sp. SCSIO 43009]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQPPADYLPSPEAALITGITPQKTVQEGLSEP
EFIAKIHTELARPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVANGIEHSNAHDAMADVVATIEMAKKVKAAQPKLFDYFFSMRQKRKLNDLVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGELLPVPVKLVHLNKCPILAPAKTLTAENAES
IGIDRQQCLANLALLRQHPEIREKLISLFSVERKFDKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=548209 J4N43_RS09000 WP_017820876.1 1915173..1916594(+) (sbcB) [Vibrio sp. SCSIO 43009]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGATTATGAGACATGGGGAACCAACCCCGCGAAAGATCGCCCAAG
CCAGTTTGCTGGTGTTCGTACAGATGAAAACTTTAATATCATCGGCGAGCCTTTAGTCATGTACTGTCAACCACCGGCTG
ATTATCTTCCGTCTCCTGAAGCTGCGCTTATTACTGGTATTACTCCGCAAAAAACGGTTCAAGAAGGCCTTTCTGAGCCA
GAGTTTATCGCTAAGATTCACACTGAACTCGCGAGACCAAATACCACCAGTTTAGGCTACAACAGCATTCGCTTTGATGA
CGAAGTGACCCGTTATACTTGTTATCGCAACTTTATCGATCCATACGCATGGAGTTGGCAAAACGGTAACTCACGTTGGG
ATTTACTCGATGTACTACGCGCGTGCCATGCCCTTCGCCCAGAAGGCGTAGAATGGCCAGAAAACGAAGATGGCTTCACT
AGCTTTAAATTAGAACACTTGTCTGTGGCTAACGGCATAGAACATAGTAACGCGCACGATGCCATGGCAGATGTGGTTGC
GACTATCGAAATGGCAAAGAAAGTAAAAGCAGCGCAACCAAAATTGTTTGATTACTTTTTTTCTATGCGCCAAAAGCGCA
AGCTCAATGATTTAGTCGACATCGTCAACATGACACCGTTGATGCACGTTTCAGGCATGCTAGGGCGCGAATGTCAGTAC
ACTAGCTGGATTGTGCCTGTTGCTTGGCATCCAACCAATAATAACGCCGTTATCACCATCGATTTAGCGAAAGACCCTCA
ACCTATTCTTGAGCTATCCGCAGAAGAGCTGCACGAAAGACTCTACACGAAGCGCGAAGATCTTGGTGAATTGCTACCAG
TGCCAGTTAAACTAGTTCATTTGAACAAATGCCCTATTCTCGCCCCTGCAAAAACGTTAACGGCTGAAAATGCAGAGTCT
ATTGGCATTGATCGCCAACAATGTCTCGCCAATCTCGCTTTGTTGCGCCAACATCCTGAAATTAGAGAAAAGCTGATTAG
CCTCTTTTCCGTCGAGCGTAAATTCGATAAAAGTGATGACGTCGATACACAGCTTTACGACGGGTTCTTTTCTCCGGCTG
ATCGCGCAGCTATGGATATCATTCGAGAAACCGACCCGAATAATCTTGCTGCATTAGACATTGAATTTGATGACAAGCGT
ATTAAACCTCTATTGTTCCGCTATCGTGCGCGTAACTTCCCAGGCACATTAGACGAGCAAGAACAAAGACGCTGGGCACT
ACACTGTCGAGAAGTGTTTGAAAGCCAAATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCGATATTAAAATCCGTGTACCGTTATGTAGAGAGCTTAGCTTCCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y0MUH5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.281

100

0.793