Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   J4N43_RS05120 Genome accession   NZ_CP071842
Coordinates   1079922..1081328 (+) Length   468 a.a.
NCBI ID   WP_005380768.1    Uniprot ID   A0AAW9BFV3
Organism   Vibrio sp. SCSIO 43009     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1074922..1086328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N43_RS05115 (J4N43_05110) uvrB 1077601..1079631 (+) 2031 WP_017636056.1 excinuclease ABC subunit UvrB -
  J4N43_RS05120 (J4N43_05115) luxO 1079922..1081328 (+) 1407 WP_005380768.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  J4N43_RS05125 (J4N43_05120) luxU 1081325..1081669 (+) 345 WP_005380770.1 quorum-sensing phosphorelay protein LuxU -
  J4N43_RS05130 (J4N43_05125) - 1081807..1082703 (-) 897 WP_005388931.1 YvcK family protein -
  J4N43_RS05135 (J4N43_05130) moaA 1083002..1083991 (+) 990 WP_017636052.1 GTP 3',8-cyclase MoaA -
  J4N43_RS05140 (J4N43_05135) moaB 1084093..1084605 (+) 513 WP_005388935.1 molybdenum cofactor biosynthesis protein B -
  J4N43_RS05145 (J4N43_05140) moaC 1084632..1085111 (+) 480 WP_005380779.1 cyclic pyranopterin monophosphate synthase MoaC -
  J4N43_RS05150 (J4N43_05145) moaD 1085108..1085365 (+) 258 WP_005388938.1 molybdopterin synthase sulfur carrier subunit -
  J4N43_RS05155 (J4N43_05150) moaE 1085367..1085822 (+) 456 WP_017821374.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 468 a.a.        Molecular weight: 52094.70 Da        Isoelectric Point: 6.2547

>NTDB_id=548206 J4N43_RS05120 WP_005380768.1 1079922..1081328(+) (luxO) [Vibrio sp. SCSIO 43009]
MQQKPEGPKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQSYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKSFIRFAPDVIERFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPLDRPS
SVAKLIEPKAMTASEIMPLWMTEKMAIEQAIEACDGNIPRAAGYLDVSPSTIYRKLQAWNGKEERQKV

Nucleotide


Download         Length: 1407 bp        

>NTDB_id=548206 J4N43_RS05120 WP_005380768.1 1079922..1081328(+) (luxO) [Vibrio sp. SCSIO 43009]
ATGCAACAAAAACCCGAAGGCCCAAAGTCTCGTTACCTTTTAATGGTCGAGGACACCGCATCTGTTGCGGCTCTGTACCG
CTCATACCTGACACCGCTTGGCATAGATATCAATATTGTCGGCACAGGTAGGGATGCCATTGAGAGCCTAAATCATCGAA
TTCCAGATCTTATTTTACTCGATCTCCGTCTGCCAGATATGACGGGGATGGACGTTTTACATGCCGTTAAAAAGAGTCAT
CCCGACGTACCTATAATTTTTATGACCGCTCACGGTTCTATCGATACCGCTGTCGAGGCCATGCGTCATGGCTCACAAGA
CTTTCTAATTAAACCGTGTGAAGCAGACCGTTTACGTGTCACGGTTAACAATGCAATTCGTAAAGCGACCAAGCTAAAAA
ATGAAGCCGATAATCCAGGCAATCAGAGCTATCAGGGGTTTATCGGCAGTAGCCAAACCATGCAGCAGGTTTACCGTACG
ATAGATTCAGCGGCGAGCAGTAAAGCGAGTATTTTTATCACAGGTGAAAGTGGAACTGGTAAAGAGGTATGTGCCGAGGC
TATTCACGCAGCAAGTAAACGTGGTGACAAACCTTTTATTGCAATTAACTGTGCTGCAATTCCAAAAGATTTGATTGAGA
GTGAACTGTTTGGTCACGTAAAAGGGGCCTTTACTGGCGCTGCGAATGATCGTCAAGGGGCAGCTGAGTTAGCGGATGGC
GGCACACTTTTTCTAGATGAGCTTTGTGAGATGGACTTGGATTTACAAACCAAGTTGCTACGATTTATTCAAACGGGCAC
ATTCCAAAAAGTGGGTTCCTCAAAAATGAAGAGCGTGGATGTGCGCTTTGTTTGTGCCACTAACCGTGATCCCTGGAAAG
AGGTACAAGAAGGTCGATTCCGTGAAGATTTGTACTATCGTTTGTATGTCATTCCTTTGCATTTACCGCCTTTACGCGAA
CGAGGCGAAGATGTTATTGAAATTGCATACTCACTGCTAGGTTACATGTCACACGAAGAAGGAAAAAGCTTCATACGTTT
TGCGCCAGATGTCATCGAGCGATTCAACAGCTATGAGTGGCCGGGTAACGTTCGTCAGTTACAAAACGTGCTACGCAATA
TCGTTGTTCTAAACAACGGTAAAGAGATTACGTTGGACATGTTACCGCCACCGTTGAATCAACCGCTTGACCGTCCGTCG
TCTGTGGCTAAATTAATTGAGCCGAAAGCGATGACCGCATCTGAGATTATGCCATTATGGATGACGGAAAAAATGGCAAT
CGAGCAAGCGATTGAAGCATGTGATGGCAATATTCCTCGAGCGGCGGGATACCTTGATGTCAGTCCGTCGACGATTTACC
GCAAGTTACAGGCATGGAACGGCAAGGAAGAGCGGCAAAAAGTATGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(419-459)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.414

95.94

0.829