Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   J4N40_RS20320 Genome accession   NZ_CP071841
Coordinates   898466..899563 (-) Length   365 a.a.
NCBI ID   WP_005385634.1    Uniprot ID   A0AAW9BFR8
Organism   Vibrio sp. SCSIO 43097     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 893466..904563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N40_RS20305 (J4N40_20165) - 894046..895104 (-) 1059 WP_065275182.1 HlyD family secretion protein -
  J4N40_RS20310 (J4N40_20170) slyA 895140..895595 (-) 456 WP_017635177.1 transcriptional regulator SlyA -
  J4N40_RS20315 (J4N40_20175) luxQ 895890..898466 (-) 2577 WP_250654688.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  J4N40_RS20320 (J4N40_20180) luxP 898466..899563 (-) 1098 WP_005385634.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  J4N40_RS20325 (J4N40_20185) - 899894..900211 (-) 318 WP_005373593.1 GIY-YIG nuclease family protein -
  J4N40_RS20330 (J4N40_20190) - 900208..900858 (-) 651 WP_005373594.1 YceH family protein -
  J4N40_RS20335 (J4N40_20195) - 901024..901227 (-) 204 WP_031777159.1 hypothetical protein -
  J4N40_RS20340 (J4N40_20200) - 901469..901783 (+) 315 WP_005373603.1 DUF496 family protein -
  J4N40_RS20345 (J4N40_20205) - 901905..903248 (+) 1344 WP_085569148.1 MATE family efflux transporter -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41587.05 Da        Isoelectric Point: 5.9503

>NTDB_id=548182 J4N40_RS20320 WP_005385634.1 898466..899563(-) (luxP) [Vibrio sp. SCSIO 43097]
MKKALVFSLISMAAFAPNVQATQVLNGYWAYQEFLDQFPQQKQLTSALAEVVRETPVPVAKDKKRPLKISVVYPGQQISD
YWIRNIDAFEKRLDKLDIDYQLNQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFVEHVLDSKKTKLILQNI
TTPVRDWEHHQPFLYVGFDHAEGSRELAVEFGKRFPKHSHYSVLYFSEGYISDIRGNTFINQVNRDNQFELQSAYYTKAT
KQSGYEAAKASLEKYPDVDFIYACSTDVALGAVDALKELGRDDVMINGWGGGSAELEALSKGELDVTVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEVVTKSDSPERIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=548182 J4N40_RS20320 WP_005385634.1 898466..899563(-) (luxP) [Vibrio sp. SCSIO 43097]
ATGAAAAAAGCGTTAGTATTCTCCCTGATTTCAATGGCCGCTTTTGCGCCGAATGTGCAGGCCACCCAAGTTCTTAATGG
GTATTGGGCATATCAAGAGTTTTTAGACCAGTTTCCACAACAGAAGCAGCTAACTAGTGCGTTGGCTGAAGTGGTAAGAG
AAACCCCTGTACCCGTAGCAAAAGACAAGAAGCGTCCACTGAAAATTTCTGTTGTTTATCCAGGGCAGCAGATCTCTGAT
TATTGGATTCGAAACATCGACGCGTTTGAAAAACGCCTAGATAAGCTTGATATCGACTATCAGCTAAATCAAGTGTTTAC
TCGTCCTAATGCAGATATAAAGCAGCAAAGTTTGTCTTTAATGGAGGCGCTGAAAAGCAACTCCGATTACTTGATCTTTA
CTCTAGATACCACAAGACATCGTAAGTTTGTTGAGCATGTCTTAGATTCAAAGAAAACCAAGTTAATTTTACAAAATATC
ACCACACCTGTTAGGGATTGGGAACATCATCAGCCGTTTCTTTATGTTGGTTTCGACCACGCAGAAGGAAGTCGTGAATT
GGCCGTTGAGTTTGGCAAGCGTTTCCCTAAACATAGCCACTATAGTGTTCTCTACTTCTCAGAGGGCTACATTAGTGACA
TCAGAGGCAACACTTTTATCAACCAAGTGAACCGCGATAATCAATTTGAACTACAATCTGCTTACTACACCAAAGCAACA
AAGCAATCTGGGTATGAAGCTGCAAAAGCCAGTTTGGAGAAGTATCCGGACGTTGACTTCATTTACGCGTGTTCTACCGA
TGTAGCATTAGGTGCTGTTGACGCTCTTAAAGAGTTAGGTCGTGATGATGTCATGATCAATGGTTGGGGCGGCGGTTCAG
CAGAGTTAGAGGCGCTTTCTAAAGGGGAGTTAGACGTTACCGTTATGCGTATGAACGATGATACAGGTATTGCAATGGCT
GAGGCCATTAAGTGGGATTTAGAAGGAAAGCCAGTTCCCACCGTTTACTCTGGTGATTTTGAAGTCGTTACCAAATCGGA
CTCTCCAGAAAGAATTGAAGCATTAAGAAAACGTGCATTTAGATACTCAGATAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.56

99.726

0.644