Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   J4N40_RS15155 Genome accession   NZ_CP071840
Coordinates   3145493..3146500 (+) Length   335 a.a.
NCBI ID   WP_005379543.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43097     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3140493..3151500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N40_RS15135 (J4N40_15005) rplC 3141036..3141665 (-) 630 WP_005379555.1 50S ribosomal protein L3 -
  J4N40_RS15140 (J4N40_15010) rpsJ 3141680..3141991 (-) 312 WP_004410492.1 30S ribosomal protein S10 -
  J4N40_RS15145 (J4N40_15015) rpmE 3142447..3142668 (-) 222 WP_005379546.1 50S ribosomal protein L31 -
  J4N40_RS15150 (J4N40_15020) priA 3142964..3145168 (+) 2205 WP_132936724.1 primosomal protein N' -
  J4N40_RS15155 (J4N40_15025) cytR 3145493..3146500 (+) 1008 WP_005379543.1 DNA-binding transcriptional regulator CytR Regulator
  J4N40_RS15160 (J4N40_15030) ftsN 3146727..3147275 (+) 549 WP_047101882.1 cell division protein FtsN -
  J4N40_RS15165 (J4N40_15035) hslV 3147391..3147942 (+) 552 WP_005383176.1 ATP-dependent protease subunit HslV -
  J4N40_RS15170 (J4N40_15040) hslU 3147966..3149297 (+) 1332 WP_005397950.1 HslU--HslV peptidase ATPase subunit -
  J4N40_RS15175 (J4N40_15045) - 3150084..3151001 (+) 918 WP_005383178.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36892.42 Da        Isoelectric Point: 6.2447

>NTDB_id=548176 J4N40_RS15155 WP_005379543.1 3145493..3146500(+) (cytR) [Vibrio sp. SCSIO 43097]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAILCQFRQQGYQQALRRAGINKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKKLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLEMLKGHDVHSGSRLLE
TNLVIRGSAAPPQRP

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=548176 J4N40_RS15155 WP_005379543.1 3145493..3146500(+) (cytR) [Vibrio sp. SCSIO 43097]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCTACGGCTACGGTATCTCGAGCCTTAATGAATCCAGAGAA
AGTCTCTTCTTCTACAAGAAAGAGAGTAGAAGATGCCGTACTTGAAGCGGGTTATTCTCCAAACTCATTAGCGCGTAACT
TACGTAGAAACGAATCAAAAACCATTGTTACTATCGTTCCCGACATCTGTGATCCTTATTTTTCTGAAATTATTCGCGGT
ATTGAAGATGCAGCCATGGAACATGGCTATCTAGTCCTGTTGGGTGATAGCGGACAACAGAAGAAACGCGAAAGCTCTTT
CGTTAACCTCGTATTTACTAAGCAGGCAGATGGAATGCTACTGCTTGGTACAGATCTACCATTCGATGTCAGTAAGCCAG
AGCAAAAGAACTTACCTCCGATGGTAATGGCGTGTGAATTTGCGCCTGAACTCGAGCTTCCGACAGTACATATTGATAAC
CTGACCTCAGCATTTGAAGCGGTGAATTACCTGACCCAATTAGGTCATAAACGCATTGCTCAAATCTCTGGACCAGATAC
AGCAATATTGTGTCAATTCCGCCAGCAAGGCTACCAACAAGCCCTGCGCCGTGCCGGCATCAATAAAGATCCGCAATATA
GTGTCATTACTGAGTTCTCTTTTGATGGCGGAGCAAAAGCCGTTCGTAAACTGCTCGAATTGCCAGAACCACCAACGGCT
ATTTTCTGTCACTGTGACACAATGGCCATCGGCGCAATTCAAGAAGCGAAAAAGCTTGGCTTACGAGTACCGCAAGATCT
CTCTGTTGTGGGCTTTGATGACATTAACTTCGCTCAGTACTGCGATCCACCGTTGACCACCATCTCTCAACCTCGCTATG
AGATTGGTCGACAAGCGATGCTAATGATGCTCGAGATGTTAAAAGGCCACGACGTGCATTCAGGCTCACGTCTGCTTGAA
ACTAATCTCGTCATTCGTGGAAGTGCAGCGCCACCACAGCGCCCTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

98.204

99.701

0.979
  cytR Vibrio cholerae C6706

89.521

99.701

0.893