Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   J4N40_RS10210 Genome accession   NZ_CP071840
Coordinates   2071667..2073088 (+) Length   473 a.a.
NCBI ID   WP_085569561.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43097     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2066667..2078088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N40_RS10190 (J4N40_10065) - 2067149..2067955 (-) 807 WP_115385892.1 adenosylcobinamide-GDP ribazoletransferase -
  J4N40_RS10195 (J4N40_10070) cobT 2067955..2068998 (-) 1044 WP_115385891.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  J4N40_RS10200 (J4N40_10075) - 2069247..2069935 (+) 689 Protein_1843 NAD(P)H-binding protein -
  J4N40_RS10205 (J4N40_10080) - 2070136..2071509 (+) 1374 WP_171345347.1 L-cystine transporter -
  J4N40_RS10210 (J4N40_10085) sbcB 2071667..2073088 (+) 1422 WP_085569561.1 exodeoxyribonuclease I Machinery gene
  J4N40_RS10215 (J4N40_10090) - 2073144..2073518 (+) 375 WP_005397786.1 CidA/LrgA family protein -
  J4N40_RS10220 (J4N40_10095) - 2073520..2074197 (+) 678 WP_005377888.1 LrgB family protein -
  J4N40_RS10225 (J4N40_10100) cdd 2074628..2075515 (+) 888 WP_005377892.1 cytidine deaminase -
  J4N40_RS10230 (J4N40_10105) purT 2075659..2076834 (+) 1176 WP_250654232.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  J4N40_RS10235 (J4N40_10110) - 2076907..2077557 (-) 651 WP_213972299.1 thiopurine S-methyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54388.58 Da        Isoelectric Point: 4.8633

>NTDB_id=548166 J4N40_RS10210 WP_085569561.1 2071667..2073088(+) (sbcB) [Vibrio sp. SCSIO 43097]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQPPADYLPSPEAALITGITPQKTVQEGLSEP
EFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVANGIEHSNAHDAMADVVATIEMAKKVKAAQPKLFDYFFSMRQKRKLNDLVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGELLPVPVKLVHLNKCPILAPAKTLTAENAES
IGIDRQQCLANLALLRQHPEIREKLISLFSVERKFDKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=548166 J4N40_RS10210 WP_085569561.1 2071667..2073088(+) (sbcB) [Vibrio sp. SCSIO 43097]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGATTATGAGACATGGGGAACCAACCCCGCGAAAGATCGCCCAAG
CCAGTTTGCTGGTGTTCGTACAGATGAAAACTTTAATATCATCGGCGAGCCTTTAGTCATGTACTGCCAGCCACCTGCTG
ATTATCTTCCGTCTCCTGAAGCTGCACTTATTACTGGTATTACTCCGCAAAAAACGGTTCAAGAAGGCCTTTCTGAGCCA
GAGTTTATCGCTAAGATTCACGCTGAACTCGCGAAACCAAATACTACCAGTTTAGGCTACAACAGCATTCGCTTTGATGA
CGAAGTGACCCGTTATACTTGTTATCGCAACTTTATCGATCCATACGCATGGAGTTGGCAAAACGGTAACTCACGTTGGG
ATTTACTCGATGTACTACGCGCGTGCCATGCCCTTCGCCCAGAAGGCGTAGAATGGCCAGAAAACGAAGATGGCTTCACT
AGCTTTAAATTAGAACACTTGTCTGTGGCTAACGGCATAGAGCATAGTAACGCGCACGATGCCATGGCAGATGTGGTTGC
GACTATCGAAATGGCAAAGAAAGTAAAAGCAGCGCAACCAAAATTGTTTGATTACTTTTTTTCTATGCGCCAAAAGCGCA
AGCTCAATGATTTAGTCGACATCGTCAACATGACACCGTTGATGCACGTTTCAGGCATGCTAGGGCGCGAATGCCAGTAC
ACTAGCTGGATTGTGCCTGTTGCTTGGCATCCAACCAATAATAACGCCGTTATCACCATCGATTTAGCGAAAGACCCTCA
ACCTATTCTTGAGCTATCCGCAGAAGAGCTGCACGAAAGACTCTACACTAAGCGCGAAGATCTTGGTGAATTGCTACCAG
TGCCAGTTAAACTAGTTCATTTGAACAAATGCCCTATTCTCGCCCCTGCAAAAACGTTAACGGCTGAAAATGCGGAGTCT
ATTGGCATTGATCGCCAGCAATGTCTCGCTAATCTCGCTTTGTTGCGCCAACATCCTGAAATTAGAGAAAAGCTGATTAG
CCTCTTTTCAGTCGAGCGTAAATTCGATAAAAGTGATGACGTCGATACACAGCTTTACGACGGGTTCTTTTCTCCGGCTG
ATCGCGCAGCTATGGATATCATTCGAGAAACCGACCCGAATAATCTTGCTGCATTAGACATTGAATTTGATGACAAGCGT
ATTAAACCTCTATTGTTCCGCTATCGTGCGCGTAACTTCCCAGGCACATTAGACGAGCAAGAACAAAGACGCTGGGCACT
ACACTGTCGAGAAGTGTTTGAAAGCCAAATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCGATATTAAAATCCGTGTACCGTTATGTAGAGAGCTTAGCTTCCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.493

100

0.795