Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   LSP19_RS15435 Genome accession   NZ_CP089061
Coordinates   3345688..3346053 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain UNC_PaerCF41     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3340688..3351053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSP19_RS15405 (LSP19_15410) pyrR 3341310..3341822 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  LSP19_RS15410 (LSP19_15415) ruvX 3341934..3342368 (-) 435 WP_031673524.1 Holliday junction resolvase RuvX -
  LSP19_RS15415 (LSP19_15420) - 3342368..3342937 (-) 570 WP_003100947.1 YqgE/AlgH family protein -
  LSP19_RS15420 (LSP19_15425) - 3342986..3343879 (-) 894 WP_003162015.1 energy transducer TonB -
  LSP19_RS15425 (LSP19_15430) gshB 3344026..3344979 (-) 954 WP_003100943.1 glutathione synthase -
  LSP19_RS15430 (LSP19_15435) pilG 3345234..3345641 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  LSP19_RS15435 (LSP19_15440) pilH 3345688..3346053 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  LSP19_RS15440 (LSP19_15445) - 3346104..3346640 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  LSP19_RS15445 (LSP19_15450) pilJ 3346725..3348773 (+) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  LSP19_RS15450 (LSP19_15455) pilK 3348834..3349709 (+) 876 WP_003100938.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=548165 LSP19_RS15435 WP_003084587.1 3345688..3346053(+) (pilH) [Pseudomonas aeruginosa strain UNC_PaerCF41]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=548165 LSP19_RS15435 WP_003084587.1 3345688..3346053(+) (pilH) [Pseudomonas aeruginosa strain UNC_PaerCF41]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAGACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364