Detailed information NTG0548154

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: J4N40_RS02995
• Genome accession: NZ_CP071840
• Coordinates: 615212..616198 (+)
• Length: 328 a.a.
• NCBI ID: WP_005380887.1
• Uniprot ID: A0A2I3CB39
• Organism: Vibrio sp. SCSIO 43097
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 610212..621198

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J4N40_RS02960 (J4N40_02960)	ftsB	610222..610503 (+)	282	WP_005380907.1	cell division protein FtsB	-
J4N40_RS02965 (J4N40_02965)	ispD	610505..611212 (+)	708	WP_017633548.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
J4N40_RS02970 (J4N40_02970)	ispF	611227..611703 (+)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
J4N40_RS02975 (J4N40_02975)	truD	611749..612792 (+)	1044	WP_017633547.1	tRNA pseudouridine(13) synthase TruD	-
J4N40_RS02980 (J4N40_02980)	surE	612792..613568 (+)	777	WP_005380894.1	5'/3'-nucleotidase SurE	-
J4N40_RS02985 (J4N40_02985)	-	613568..614194 (+)	627	WP_005380892.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
J4N40_RS02990 (J4N40_02990)	-	614208..615131 (+)	924	WP_250654365.1	peptidoglycan DD-metalloendopeptidase family protein	-
J4N40_RS02995 (J4N40_02995)	rpoS	615212..616198 (+)	987	WP_005380887.1	RNA polymerase sigma factor RpoS	Regulator
J4N40_RS03000 (J4N40_03000)	mutS	616281..618842 (-)	2562	WP_064354301.1	DNA mismatch repair protein MutS	-
J4N40_RS03005 (J4N40_03005)	pncC	618927..619409 (+)	483	WP_017633544.1	nicotinamide-nucleotide amidase	-
J4N40_RS03010 (J4N40_03010)	recA	619610..620653 (+)	1044	WP_005380874.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37412.31 Da
• Isoelectric Point: 4.7299

>NTDB_id=548154 J4N40_RS02995 WP_005380887.1 615212..616198(+) (rpoS) [Vibrio sp. SCSIO 43097]
MSISNTVTKVEEFAFDNASVKTIDNELERSSSTESKATAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=548154 J4N40_RS02995 WP_005380887.1 615212..616198(+) (rpoS) [Vibrio sp. SCSIO 43097]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGCATTTGACAATGCGTCAGTGAAGACCATTGATAACGAACT
CGAAAGATCATCATCCACAGAAAGCAAAGCGACTGCGCGTGAAGAATTTGACGCGAGCAGTAAAAGCTTAGATGCAACTC
AGTTGTATTTGGGCGAAATTGGCTTCTCACCTTTACTTACTGCCGAAGAAGAAGTGCTTTACGCAAGACGCGCCCTACGT
GGCGACGAAGCGGCACGCAAACGTATGATCGAAAGTAACCTACGTTTGGTTGTTAAGATTTCTCGTCGATACAGTAACCG
TGGTCTAGCACTACTTGATCTGATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTCGAAAAATTCGACCCAGAACGTG
GTTTCCGTTTCTCTACTTACGCAACGTGGTGGATCCGACAAACGATAGAGCGAGCGTTGATGAACCAAACTCGCACGATC
CGTCTACCTATCCATGTAGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCACGA
ACCGACCGCAGAGGAAATTGCTGCTCAATTAGATATTCCAGTCGAAGACGTAAGCAAAATGTTACGCCTTAATGAGCGTA
TTAGCTCTGTCGACACGCCAATCGGTGGTGACGGTGAGAAAGCGCTGCTGGATATTATTCCTGATGCAAACAACTCTGAT
CCAGAAGTTTCGACTCAAGATGACGACATCAAATCATCGTTGATTCATTGGTTAGAAGAGTTGAATCCGAAACAGAAAGA
AGTGCTTGCACGACGCTTCGGCCTACTAGGCTATGAGCCTTCGACGCTGGAAGAAGTTGGTCGAGAGATTGGTCTGACAC
GTGAGCGAGTACGTCAAATACAAGTGGAAGGTTTACGTCGTCTTCGTGAAGTCCTAATCAAACAAGGTTTGAATATGGAA
AACTTGTTTAACGTAGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

3D structure

• AlphaFold DB: A0A2I3CB39

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.854