Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   IM758_RS16760 Genome accession   NZ_CP071819
Coordinates   3377873..3378469 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae subsp. pneumoniae strain 90CM2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3372873..3383469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM758_RS16745 (IM758_16740) helD 3373081..3375135 (-) 2055 WP_004224033.1 DNA helicase IV -
  IM758_RS16750 (IM758_16745) - 3375260..3375706 (+) 447 WP_004224032.1 YccF domain-containing protein -
  IM758_RS16755 (IM758_16750) yccS 3375724..3377859 (+) 2136 WP_002898422.1 YccS family putative transporter -
  IM758_RS16760 (IM758_16755) sxy/tfoX 3377873..3378469 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  IM758_RS16765 (IM758_16760) sulA 3378818..3379327 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  IM758_RS16770 (IM758_16765) ompA 3379680..3380750 (+) 1071 WP_002898408.1 porin OmpA -
  IM758_RS16775 (IM758_16770) matP 3380881..3381333 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  IM758_RS16780 (IM758_16775) - 3381519..3383276 (+) 1758 WP_004147851.1 AAA family ATPase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=548105 IM758_RS16760 WP_004179217.1 3377873..3378469(-) (sxy/tfoX) [Klebsiella pneumoniae subsp. pneumoniae strain 90CM2]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=548105 IM758_RS16760 WP_004179217.1 3377873..3378469(-) (sxy/tfoX) [Klebsiella pneumoniae subsp. pneumoniae strain 90CM2]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51