Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   CSB63_RS06965 Genome accession   NZ_CP089060
Coordinates   1310261..1311187 (-) Length   308 a.a.
NCBI ID   WP_134973352.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CH8     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1305261..1316187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSB63_RS06935 (CSB63_1453) - 1305338..1306132 (-) 795 WP_024010002.1 HAD-IIB family hydrolase -
  CSB63_RS06940 (CSB63_1454) - 1306317..1306694 (+) 378 WP_024010003.1 GntR family transcriptional regulator -
  CSB63_RS06945 (CSB63_1455) - 1306699..1307397 (+) 699 WP_134973351.1 ABC transporter ATP-binding protein -
  CSB63_RS06950 (CSB63_1456) - 1307409..1308194 (+) 786 WP_002951425.1 hypothetical protein -
  CSB63_RS06955 (CSB63_1457) - 1308244..1309173 (-) 930 WP_011681415.1 ATP-binding cassette domain-containing protein -
  CSB63_RS06960 (CSB63_1458) amiE 1309166..1310251 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  CSB63_RS06965 (CSB63_1459) amiD 1310261..1311187 (-) 927 WP_134973352.1 oligopeptide ABC transporter permease OppC Regulator
  CSB63_RS06970 (CSB63_1460) amiC 1311187..1312680 (-) 1494 WP_065972442.1 ABC transporter permease Regulator
  CSB63_RS06975 (CSB63_1461) amiA 1312742..1314709 (-) 1968 WP_134973353.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34724.88 Da        Isoelectric Point: 9.7054

>NTDB_id=548058 CSB63_RS06965 WP_134973352.1 1310261..1311187(-) (amiD) [Streptococcus thermophilus strain CH8]
MASIDKSKFQFVKRDDFASETIDAPSYSYWKSVMRQFFKKKSTVVMLGILITIILMSFIYPMFSKFDFNDVSKVNDFSLR
YVHPNAQYWFGTDGNGKSLFDSVWFGARNSILIAVIATFLNVIIGLLVGAVWGISKTFDMIMMEIYNIISNIPSLLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRNLGTPTTKIVIKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLALFIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=548058 CSB63_RS06965 WP_134973352.1 1310261..1311187(-) (amiD) [Streptococcus thermophilus strain CH8]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCACCGTCTTA
CTCATACTGGAAATCAGTGATGCGTCAATTTTTTAAAAAGAAATCAACAGTTGTAATGTTGGGAATCTTGATTACTATTA
TTTTAATGAGTTTCATCTACCCAATGTTTTCTAAATTTGACTTCAATGATGTCTCAAAAGTAAATGATTTCAGTTTGCGT
TATGTACATCCAAACGCTCAATACTGGTTCGGTACTGACGGTAATGGTAAGTCTCTATTTGACAGTGTTTGGTTTGGGGC
TCGTAATTCTATCCTTATCGCTGTTATCGCTACCTTCCTGAATGTTATAATTGGTTTGCTTGTAGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAATATTCCCTCTCTCCTTGTGGTTATCGTC
TTGACTTACTCATTAGGTGCTGGTTTCTGGAATATGATTTTTGCCATGACCGTAACAGGTTGGATCGGTATTGCCTATAC
AATCCGTATTCAAATCATGCGTTATCGTGATTTGGAGTATAACTTGGCTTCTCGCAATTTGGGAACACCAACGACTAAGA
TTGTGATTAAAAATATCATGCCACAACTTGTGTCAGTTATTGTAACCATGGCTAGTCAACTTTTGCCAGGATTTATCTCT
TATGAGGCCTTCCTTTCATACTTTGGTTTGGGTCTTCCTGTTACTACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAGAACGTTACAGTCAATGCCTATCTCTTCTGGATTCCATTGACTACCTTGATTCTTGTTTCTCTTGCCCTCTTTATTG
TTGGTCAAAACTTAGCGGATGCTAGTGACCCACGTACGCATAGATAG

Domains

Predicted by InterProScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-71)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

99.675

100

0.997
  amiD Streptococcus thermophilus LMD-9

99.675

100

0.997
  amiD Streptococcus salivarius strain HSISS4

96.104

100

0.961