Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   EXW53_RS21205 Genome accession   NZ_CP071808
Coordinates   4112015..4114351 (-) Length   778 a.a.
NCBI ID   WP_002111980.1    Uniprot ID   J7XSZ2
Organism   Bacillus mycoides strain JAS014     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4107015..4119351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW53_RS21180 (EXW53_21235) alaS 4107044..4109686 (-) 2643 WP_215557494.1 alanine--tRNA ligase -
  EXW53_RS21185 (EXW53_21240) - 4110059..4111126 (-) 1068 WP_002111978.1 AI-2E family transporter -
  EXW53_RS21190 (EXW53_21245) - 4111303..4111515 (+) 213 WP_002199288.1 hypothetical protein -
  EXW53_RS21195 (EXW53_21250) - 4111552..4111680 (-) 129 WP_002015286.1 YrzQ family protein -
  EXW53_RS21200 (EXW53_21255) - 4111699..4111887 (-) 189 WP_002015288.1 hypothetical protein -
  EXW53_RS21205 (EXW53_21260) recD2 4112015..4114351 (-) 2337 WP_002111980.1 ATP-dependent RecD-like DNA helicase Machinery gene
  EXW53_RS21210 (EXW53_21265) - 4114459..4115118 (-) 660 WP_002111982.1 tetratricopeptide repeat protein -
  EXW53_RS21215 (EXW53_21270) mnmA 4115229..4116344 (-) 1116 WP_215557495.1 tRNA 2-thiouridine(34) synthase MnmA -
  EXW53_RS21220 (EXW53_21275) - 4116361..4117506 (-) 1146 WP_215557496.1 cysteine desulfurase family protein -
  EXW53_RS21225 (EXW53_21280) - 4117542..4117958 (-) 417 WP_000704117.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87197.82 Da        Isoelectric Point: 5.3335

>NTDB_id=548024 EXW53_RS21205 WP_002111980.1 4112015..4114351(-) (recD2) [Bacillus mycoides strain JAS014]
MGNQHAMDLFEEEKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYLVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPDALNGVVNKQKAQEIYETIIEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYKLIEEVDGIGFGRADDIGRAIGITGNHDDRVRAGCFYTLENIS
LQLGHVYMEKGQLVRETMSLLNNQEGRVTEEDIVGCVEMMQSEGKVIIEEERVYLASLFYSEKGVVKSIRRLMNQEETPA
FPEAEVLKTLGEIEEQLKVQYAPLQQEAVQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGVSLNPNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKGGALPPDLAQNKKDRSFISCTGAQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQEVFNPKREKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKF
LIICGEEAAFQSGVNRLDDAMRQTTLAGRLQESQGEVQMVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=548024 EXW53_RS21205 WP_002111980.1 4112015..4114351(-) (recD2) [Bacillus mycoides strain JAS014]
ATGGGAAATCAACATGCAATGGATTTGTTTGAGGAAGAGAAAAAATTTATAAAAGCGCAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAGTCATTGAAACGAATGAAACATACGACGAAAAAAAAGTAATGA
TAAACGGTCATTTTCCCCGTATGCATGAAGATGAAGTGTTTACATTAACAGGTCATTTTAAGGACCATCCAAAGTATGGA
AAACAATATTTAGTTGAAACGTTTAAAAAAGAACTGCCACAAACAAAAGCAGGTATGGTGCAATATTTAGCGAGCGATTT
ATTTAAAGGGATTGGAAAGCGTACAGCCGAAAAAATCGTGGACCATCTCGGTGAGCATGCGATTTCTAAAATTATGGATG
ATCCTGATGCGCTAAATGGTGTTGTAAACAAGCAAAAGGCGCAGGAAATATATGAGACGATTATTGAGCATCAAGGGCTC
GAGAAAGTGATGAGTTTTTTAAATGGTTACGGTTTTGGAACAAAACTTTCTATTAAAATTTATCAGCAATATAAAGAGAT
GACATTAGAAGTGATTCGTAATAATCCGTATAAACTTATTGAAGAAGTGGATGGAATTGGATTTGGAAGAGCAGATGATA
TAGGGCGTGCAATCGGAATAACAGGCAATCACGACGACCGTGTACGTGCAGGGTGTTTTTATACGTTAGAGAATATTTCA
TTACAACTCGGTCACGTGTATATGGAAAAAGGTCAGCTTGTAAGAGAAACAATGTCACTTTTAAATAATCAAGAAGGCAG
AGTGACTGAGGAAGATATTGTAGGTTGCGTTGAAATGATGCAAAGCGAAGGGAAAGTCATTATAGAAGAAGAGCGAGTGT
ATTTAGCTTCTTTATTCTATTCTGAGAAAGGCGTTGTAAAGTCAATTCGTCGTCTTATGAATCAAGAAGAAACCCCTGCA
TTCCCTGAAGCAGAAGTGTTAAAAACATTAGGAGAAATTGAAGAACAGCTAAAGGTGCAGTATGCGCCGCTTCAGCAAGA
AGCAGTTCAAACTGCACTTCATAAGCCGATGATGTTATTAACAGGTGGACCAGGAACGGGGAAAACAACAGTTATTAAAG
GGATTGTTGAAATGTATGCATCACTTCACGGAGTATCATTAAATCCGAATGAATATAGTGATGATAATCCATTTCCGATT
TTATTAACGGCTCCAACTGGAAGAGCAGCGAAGCGAATGAGTGAATCGACGGGGCTTCCGGCGTGCACAATTCATCGTCT
GCTCGGTTGGACGCCAGAAGGGTCTTTCCAGCGTAATGAAACCGATCCGGTACAAGGAAAGTTACTCATTATTGATGAGT
TTTCAATGGTTGACATTTGGCTTGCAAATCAGCTGTTTAAGTCGCTTCCGACAAATATTCAAGTTATCGTTGTAGGTGAT
GAAGATCAGTTGCCATCTGTAGGGCCTGGACAAGTGCTAAAAGACTTATTGAATGCAGGTGCAGTTCCAACGGTCAAGCT
TACAGAAATTTATCGTCAAGCGGAAGGGTCATCTGTTATTCAGCTTGCCCATGCGATAAAAGGTGGTGCGCTTCCGCCAG
ATTTAGCACAAAATAAAAAGGATCGTTCCTTTATTTCTTGTACAGGCGCTCAAATCGTTGAAGTTGTAAAAAAAGTATGT
GAAAATGCTAAGACAAAAGGATTTAGCGCAAGAGATGTACAAGTATTGGCACCTATGTACCGCGGACCGGCAGGTATTAA
TGTGTTAAATGAAGCTCTCCAAGAAGTGTTTAATCCGAAAAGGGAAAAAAGTAAAGAAATTGCATACGGTGATGTTGTAT
ACCGCAGAGGAGATAAAGTACTGCAACTCGTTAATCAGCCAGAGAGCCAGGTGTTTAATGGTGATATCGGAGAAATCGTT
TCGGTGTTTTATGCGAAAGAAAACGTTGAGCAACAAGATATGATTATCGTTTCATTTGATGGGATTGAAGTAACGTATAC
AAAGCCAGATTTAAATCAAATTACACATGCATATTGCTGCTCGATTCATAAATCACAAGGTAGTGAATTTCCGATTGTTA
TTATGCCGATTGTAAAAAGCTACAACCGTATGTTACGTCGTAATTTAATTTACACGGGTATTACAAGAAGTAAGAAATTC
CTTATTATTTGCGGGGAGGAAGCAGCTTTTCAATCCGGTGTGAATCGCCTTGATGATGCAATGCGTCAAACGACTTTAGC
TGGCCGATTGCAAGAATCACAAGGCGAAGTGCAAATGGTGACGGTTAATGGTGAAGAAATGGATGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(341-548)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J7XSZ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

56.764

100

0.577