Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   CSB63_RS01885 Genome accession   NZ_CP089060
Coordinates   339682..340344 (+) Length   220 a.a.
NCBI ID   WP_002949747.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CH8     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 334682..345344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSB63_RS01860 (CSB63_0349) - 335000..335710 (+) 711 WP_002947183.1 ABC transporter ATP-binding protein -
  CSB63_RS01865 - 335846..336506 (+) 661 Protein_318 CBS and ACT domain-containing protein -
  CSB63_RS01870 (CSB63_0352) cysK 336673..337599 (-) 927 WP_002947179.1 cysteine synthase A -
  CSB63_RS01875 (CSB63_0353) - 337701..338327 (-) 627 WP_002949745.1 YigZ family protein -
  CSB63_RS01880 (CSB63_0354) comFA/cflA 338382..339701 (+) 1320 WP_011226886.1 DEAD/DEAH box helicase Machinery gene
  CSB63_RS01885 (CSB63_0355) comFC/cflB 339682..340344 (+) 663 WP_002949747.1 ComF family protein Machinery gene
  CSB63_RS01890 (CSB63_0356) hpf 340423..340971 (+) 549 WP_011225518.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 26037.39 Da        Isoelectric Point: 8.9833

>NTDB_id=548018 CSB63_RS01885 WP_002949747.1 339682..340344(+) (comFC/cflB) [Streptococcus thermophilus strain CH8]
MKCLLCNEWIEPVAQLSDLIMFKQRREYSCEDCKAQFKKLGKARCSNCYKIIDGNSCFDCKIWAKKGYIPKHFAIYRYEE
NMKEYFSRYKFMGDYCLRKIFQQEIKANLKSFLKKGYILVPVPLSEERLEERGFNQVKGLLEGIPYKNIFEKREIEKQSS
RTREERLSQDNSFSLKKGIELPSKIIIIDDIYTTGSTLYQMVKLLDDLDVKEVLTFSLAR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=548018 CSB63_RS01885 WP_002949747.1 339682..340344(+) (comFC/cflB) [Streptococcus thermophilus strain CH8]
ATGAAGTGTCTACTATGTAATGAATGGATTGAACCAGTAGCTCAATTAAGTGATTTAATTATGTTTAAACAAAGAAGAGA
GTATTCTTGTGAAGATTGTAAAGCTCAATTTAAAAAGCTTGGGAAGGCGAGATGTTCAAATTGTTATAAAATAATAGATG
GAAATAGTTGCTTTGATTGCAAAATTTGGGCGAAAAAAGGCTATATTCCAAAACATTTTGCCATTTATCGTTATGAAGAA
AACATGAAAGAGTACTTTAGTCGCTATAAATTTATGGGAGATTATTGTCTTAGAAAAATATTTCAACAAGAAATTAAAGC
CAATTTAAAGTCTTTTTTAAAGAAAGGTTATATCTTAGTACCTGTCCCCTTGTCGGAAGAACGCCTGGAAGAGAGAGGAT
TCAATCAAGTTAAAGGATTACTAGAGGGAATCCCCTATAAAAACATTTTTGAAAAAAGAGAGATCGAGAAGCAATCCTCG
AGAACACGCGAAGAGCGGTTAAGTCAAGATAATTCTTTCAGTTTGAAAAAAGGTATTGAGCTACCAAGTAAGATCATCAT
AATCGATGATATTTACACAACAGGATCTACCCTGTATCAAATGGTCAAACTATTAGATGATTTAGATGTCAAAGAAGTTT
TGACATTTTCCTTAGCTAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

45.045

100

0.455
  comFC/cflB Streptococcus mitis SK321

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae Rx1

43.694

100

0.441
  comFC/cflB Streptococcus pneumoniae D39

43.694

100

0.441
  comFC/cflB Streptococcus pneumoniae R6

43.694

100

0.441
  comFC/cflB Streptococcus pneumoniae TIGR4

43.694

100

0.441