Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   EXW53_RS06405 Genome accession   NZ_CP071808
Coordinates   1247024..1247347 (-) Length   107 a.a.
NCBI ID   WP_002064339.1    Uniprot ID   J8AHG1
Organism   Bacillus mycoides strain JAS014     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1242024..1252347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW53_RS06380 (EXW53_06390) - 1242233..1243519 (+) 1287 WP_215558181.1 D-alanyl-D-alanine carboxypeptidase family protein -
  EXW53_RS06385 (EXW53_06395) sipW 1243720..1244289 (+) 570 WP_002201287.1 signal peptidase I SipW -
  EXW53_RS06390 (EXW53_06400) - 1244351..1244938 (+) 588 WP_215558182.1 CalY family protein -
  EXW53_RS06395 (EXW53_06405) - 1245074..1245961 (+) 888 WP_215558183.1 DUF4047 domain-containing protein -
  EXW53_RS06400 (EXW53_06410) calY 1246349..1246942 (+) 594 WP_002064338.1 biofilm matrix protein CalY -
  EXW53_RS06405 (EXW53_06415) sinR 1247024..1247347 (-) 324 WP_002064339.1 helix-turn-helix domain-containing protein Regulator
  EXW53_RS06410 (EXW53_06420) - 1247427..1247561 (-) 135 WP_000276220.1 anti-repressor SinI family protein -
  EXW53_RS06415 (EXW53_06425) inhA1 1247903..1250290 (+) 2388 WP_215558184.1 M6 family metalloprotease immune inhibitor InhA1 -
  EXW53_RS06420 (EXW53_06430) - 1250462..1251829 (+) 1368 WP_215558185.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12320.06 Da        Isoelectric Point: 7.2050

>NTDB_id=548007 EXW53_RS06405 WP_002064339.1 1247024..1247347(-) (sinR) [Bacillus mycoides strain JAS014]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKISAVLQIPVDTLLHDETTTESHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTQWKKNQQ

Nucleotide


Download         Length: 324 bp        

>NTDB_id=548007 EXW53_RS06405 WP_002064339.1 1247024..1247347(-) (sinR) [Bacillus mycoides strain JAS014]
ATGATAGGAGAACGTATAAAACGCCTTCGTTTACAAAAGGGCATTTCACTAACAGAACTCGCCGAAAAAGCTGGTGTAGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTCGAAAAAATTTCAGCTGTTC
TACAAATTCCAGTTGATACGTTACTTCACGATGAAACAACAACAGAAAGTCATCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCGATGAGCTCCGGTGTCTCAAAAGAACAGTTTCGTGAATTTCTTGAATTTACACAATGGAAGAAAAATCAACA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J8AHG1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692