Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   CSB63_RS00860 Genome accession   NZ_CP089060
Coordinates   140995..141492 (+) Length   165 a.a.
NCBI ID   WP_002949220.1    Uniprot ID   Q5M6C4
Organism   Streptococcus thermophilus strain CH8     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 135995..146492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSB63_RS09990 - 136622..136877 (-) 256 Protein_110 ISL3 family transposase -
  CSB63_RS00830 (CSB63_0119) - 137080..137301 (+) 222 WP_002948904.1 DUF4649 family protein -
  CSB63_RS00835 - 137386..137702 (-) 317 Protein_112 transposase -
  CSB63_RS00840 (CSB63_0121) - 137982..138224 (+) 243 WP_246752677.1 M20/M25/M40 family metallo-hydrolase -
  CSB63_RS00845 (CSB63_0122) - 138327..139517 (+) 1191 WP_134973038.1 SAM-dependent methyltransferase -
  CSB63_RS00850 (CSB63_0123) - 139777..140241 (-) 465 Protein_115 transposase family protein -
  CSB63_RS00855 - 140599..140703 (+) 105 Protein_116 IS200/IS605 family transposase -
  CSB63_RS00860 (CSB63_0124) comX 140995..141492 (+) 498 WP_002949220.1 sigma factor Regulator
  CSB63_RS00865 (CSB63_0125) - 141592..142434 (-) 843 WP_064355676.1 mechanosensitive ion channel family protein -
  CSB63_RS00870 (CSB63_0126) tig 142575..143858 (+) 1284 WP_134973039.1 trigger factor -
  CSB63_RS00875 (CSB63_0127) rpoE 144016..144591 (+) 576 WP_002949228.1 DNA-directed RNA polymerase subunit delta -
  CSB63_RS00880 (CSB63_0128) - 144842..146446 (+) 1605 WP_002949230.1 CTP synthase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 20160.12 Da        Isoelectric Point: 5.2073

>NTDB_id=548002 CSB63_RS00860 WP_002949220.1 140995..141492(+) (comX) [Streptococcus thermophilus strain CH8]
MEQEVFVKAYEKVRPIVLKAFRQYFIQLWDQADMEQEAMMTLYQLLKKFPDLEKDDDKLRRYFKTKFRNRLNDEVRRQES
VKRQANRQCYVEISDIAFCIPNKELDMVDRLAYDEQLNAFREQLSSEDSLKLDRLLGGECFRGRKKMIRELRFWMVDFDP
CNEED

Nucleotide


Download         Length: 498 bp        

>NTDB_id=548002 CSB63_RS00860 WP_002949220.1 140995..141492(+) (comX) [Streptococcus thermophilus strain CH8]
ATGGAACAAGAAGTTTTTGTTAAGGCATATGAAAAGGTAAGGCCAATTGTACTTAAGGCTTTTAGGCAATACTTTATTCA
GCTTTGGGATCAAGCTGACATGGAGCAAGAGGCGATGATGACTTTGTATCAGCTTTTAAAAAAGTTTCCTGATTTAGAGA
AAGATGATGATAAGTTACGTCGTTACTTTAAAACTAAGTTTAGGAATCGACTTAATGATGAAGTGAGGCGGCAGGAGTCA
GTAAAACGTCAAGCTAATAGACAGTGCTATGTTGAAATTTCAGATATTGCCTTTTGTATTCCCAATAAGGAGCTAGATAT
GGTTGATAGACTTGCTTATGATGAACAGCTTAATGCTTTTCGTGAGCAGTTATCATCGGAAGATTCTCTTAAGTTGGATC
GATTGTTGGGTGGTGAATGCTTTAGGGGAAGGAAAAAGATGATACGAGAGTTAAGATTTTGGATGGTTGACTTTGATCCA
TGTAATGAAGAAGACTGA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(10-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M6C4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.