Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   CSB63_RS00255 Genome accession   NZ_CP089060
Coordinates   34996..35769 (+) Length   257 a.a.
NCBI ID   WP_065972746.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CH8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 29996..40769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSB63_RS00235 (CSB63_0029) - 30181..31548 (+) 1368 WP_134973007.1 PcsB-like coiled-coil domain-containing protein -
  CSB63_RS00240 (CSB63_0030) - 31761..32726 (+) 966 WP_011680585.1 ribose-phosphate diphosphokinase -
  CSB63_RS00245 - 32775..33622 (-) 848 Protein_28 transposase -
  CSB63_RS00250 (CSB63_0033) - 33834..35009 (+) 1176 WP_011680586.1 pyridoxal phosphate-dependent aminotransferase -
  CSB63_RS00255 (CSB63_0034) recO 34996..35769 (+) 774 WP_065972746.1 DNA repair protein RecO Machinery gene
  CSB63_RS00260 (CSB63_0035) plsX 35985..36989 (+) 1005 WP_134973008.1 phosphate acyltransferase PlsX -
  CSB63_RS00265 (CSB63_0036) - 36989..37234 (+) 246 WP_002949008.1 phosphopantetheine-binding protein -
  CSB63_RS00270 (CSB63_0037) purC 37519..38226 (+) 708 WP_011226729.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29782.01 Da        Isoelectric Point: 5.0766

>NTDB_id=547994 CSB63_RS00255 WP_065972746.1 34996..35769(+) (recO) [Streptococcus thermophilus strain CH8]
MQKLESRGVILFNRNYRENDKLVKIFTKQAGKRMFFVRGGGSGKLSAVIQPLNIAEFMMTVNDEGLSFIEDYSQAESFKE
ITSDIFKLSYATYLAALTDAAIADGVVDAQLFAFLEKTLVLMEEGLDYEILTNIFEIQVLDRFGVRLNFHECVFCHRVGL
PFDFSYKFSGLLCPNHYEEDERRSHLDPNVPYLLDRFQGLSFEELRSISVKDEMKRKLRQFIDELYDNYVGIHLKSKKFI
DNLNSWGHIMSKEDNAD

Nucleotide


Download         Length: 774 bp        

>NTDB_id=547994 CSB63_RS00255 WP_065972746.1 34996..35769(+) (recO) [Streptococcus thermophilus strain CH8]
ATGCAGAAGCTTGAGAGTAGGGGGGTTATCCTCTTCAATCGTAATTATCGTGAGAATGATAAGCTGGTTAAGATTTTTAC
TAAACAAGCTGGTAAACGGATGTTTTTTGTTAGAGGTGGTGGGTCAGGTAAATTGAGTGCTGTGATTCAACCTTTAAACA
TCGCTGAATTTATGATGACTGTAAATGATGAAGGTTTATCTTTCATAGAGGATTATAGTCAGGCAGAGTCTTTTAAGGAA
ATTACAAGTGATATTTTTAAACTGTCTTACGCGACCTATTTAGCTGCCTTGACTGATGCTGCTATTGCTGACGGTGTGGT
AGATGCACAATTATTTGCATTTTTAGAGAAAACCCTTGTGTTAATGGAAGAGGGCTTAGATTATGAAATATTGACTAATA
TCTTTGAGATTCAAGTTTTGGACCGTTTTGGCGTACGATTGAATTTTCATGAATGTGTCTTTTGTCATCGTGTTGGTCTT
CCTTTTGATTTCTCGTATAAGTTCTCAGGTTTACTTTGTCCCAATCATTACGAAGAAGATGAAAGGCGTAGTCATTTGGA
CCCTAATGTGCCTTATCTTTTGGATCGTTTCCAGGGTCTTTCGTTTGAAGAATTGAGAAGCATATCTGTTAAGGATGAAA
TGAAACGAAAGTTGAGACAATTTATTGATGAGCTTTATGATAATTATGTTGGGATTCATCTTAAAAGCAAGAAGTTTATT
GATAATCTAAATTCTTGGGGTCATATTATGAGTAAAGAAGATAATGCTGATTAA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

61.66

98.444

0.607