Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   EXW53_RS00220 Genome accession   NZ_CP071808
Coordinates   40518..40802 (-) Length   94 a.a.
NCBI ID   WP_000843037.1    Uniprot ID   A0A366FUU6
Organism   Bacillus mycoides strain JAS014     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 35518..45802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW53_RS00185 (EXW53_00185) tmk 35672..36298 (+) 627 WP_215557792.1 dTMP kinase -
  EXW53_RS00190 (EXW53_00190) holB 36334..37317 (+) 984 WP_215557793.1 DNA polymerase III subunit delta' -
  EXW53_RS00195 (EXW53_00195) - 37323..38150 (+) 828 WP_002107285.1 stage 0 sporulation family protein -
  EXW53_RS00200 (EXW53_00200) yabA 38165..38515 (+) 351 WP_002009639.1 DNA replication initiation control protein YabA -
  EXW53_RS00205 (EXW53_00205) - 38636..39376 (+) 741 WP_002107286.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  EXW53_RS00210 (EXW53_00210) - 39363..39653 (+) 291 WP_002124512.1 GIY-YIG nuclease family protein -
  EXW53_RS00215 (EXW53_00215) rsmI 39622..40497 (+) 876 WP_002107288.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  EXW53_RS00220 (EXW53_00220) abrB 40518..40802 (-) 285 WP_000843037.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  EXW53_RS00225 (EXW53_00225) metG 41143..43152 (+) 2010 WP_080013799.1 methionine--tRNA ligase -
  EXW53_RS00230 (EXW53_00230) - 43318..44085 (+) 768 WP_002107291.1 TatD family hydrolase -
  EXW53_RS00235 (EXW53_00235) rnmV 44346..44903 (+) 558 WP_002107292.1 ribonuclease M5 -
  EXW53_RS00240 (EXW53_00240) rsmA 44900..45778 (+) 879 WP_002091590.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10476.14 Da        Isoelectric Point: 4.7174

>NTDB_id=547992 EXW53_RS00220 WP_000843037.1 40518..40802(-) (abrB) [Bacillus mycoides strain JAS014]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QVLNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=547992 EXW53_RS00220 WP_000843037.1 40518..40802(-) (abrB) [Bacillus mycoides strain JAS014]
ATGAAATCTACTGGTATCGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCTCTTGAAATCTATGTTGATGACGAGAAAATCATCTTAAAGAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGTAACCTATCTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAA
CAAGTCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A366FUU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

84.043

100

0.84