Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   JZ789_RS05645 Genome accession   NZ_CP071806
Coordinates   1104594..1105397 (-) Length   267 a.a.
NCBI ID   WP_002935843.1    Uniprot ID   -
Organism   Streptococcus suis strain GX69     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1099594..1110397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZ789_RS05625 (JZ789_05565) - 1099661..1100707 (-) 1047 WP_170244690.1 D-alanine--D-alanine ligase -
  JZ789_RS05630 (JZ789_05570) recR 1100812..1101408 (-) 597 WP_002935848.1 recombination mediator RecR -
  JZ789_RS05635 (JZ789_05575) pbp2b 1101417..1103492 (-) 2076 WP_024394417.1 penicillin-binding protein PBP2B -
  JZ789_RS05640 (JZ789_05580) - 1103584..1104033 (-) 450 WP_043032937.1 ATP-binding cassette domain-containing protein -
  JZ789_RS05645 (JZ789_05585) vicX 1104594..1105397 (-) 804 WP_002935843.1 MBL fold metallo-hydrolase Regulator
  JZ789_RS05650 (JZ789_05590) micB 1105404..1106753 (-) 1350 WP_002935841.1 cell wall metabolism sensor histidine kinase VicK Regulator
  JZ789_RS05655 (JZ789_05595) micA 1106746..1107450 (-) 705 WP_002935840.1 response regulator YycF Regulator
  JZ789_RS05660 (JZ789_05600) - 1107644..1108405 (+) 762 WP_002935839.1 amino acid ABC transporter ATP-binding protein -
  JZ789_RS05665 (JZ789_05605) - 1108416..1109255 (+) 840 WP_002935837.1 transporter substrate-binding domain-containing protein -
  JZ789_RS05670 (JZ789_05610) - 1109270..1109968 (+) 699 WP_002935835.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29659.75 Da        Isoelectric Point: 5.7755

>NTDB_id=547954 JZ789_RS05645 WP_002935843.1 1104594..1105397(-) (vicX) [Streptococcus suis strain GX69]
MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLAEIDRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIESNHDIEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGVDFQVYDTSPDTATPLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=547954 JZ789_RS05645 WP_002935843.1 1104594..1105397(-) (vicX) [Streptococcus suis strain GX69]
ATGATCGGAAAAGGTTTTAATTATAGTATTTTAGCTTCGGGGTCCAGCGGGAATTGTTTTTACCTAGAAACAGATAAAAA
GAAAATCTTAGTGGATGCTGGCTTATCAGGGAAAAAGATTACCAGTCTTTTGGCGGAAATTGATCGAAAGCCTGAGGATA
TTGATGCTATCCTGGTAACGCATGAACATAGCGATCACATCCATGGTATCGGTGTTTTAGCACGTAAGTATGGGATGGAC
ATTTATGCCAATGAATTGACCTGGCAGGCTATGGAGAGCAAATTGGGCAAGATTGATGTGGCTCAAAAACATATCTTTGA
ATTGGGTGCTATGAAGACTTTTGGCGACCTAGATATTGAGTCCTTTGGAGTTAGCCATGATGCTGCATGTCCGCAATTTT
ACCGTTTTATGAAGGATGACAAATCCTTTGTTATGTTGACGGATACAGGCTATGTCAGTGACCGCATGGTTGGAATTGTA
GAAAATGCCGATGCTTATTTGATTGAATCCAACCATGATATTGAAATTTTGCGCTCGGGTTCTTACTCTTGGAACCTCAA
ACAACGGATTTTGTCAGATAAGGGTCATCTTTGTAATGAAGATGGAGCTGATGCCATGATTCGCTCGTTGGGAAATCGGA
CCAAAAAGATTTACCTAGGGCATTTGTCAAAGGAAAACAATATCAAGGAATTGGCTCACATGACCATGGTTAATCAGTTG
GCGCAGGCTGATTTAGGAGTTGGAGTGGATTTCCAAGTCTATGACACATCGCCAGATACAGCGACTCCCTTGACCAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.154

100

0.772