Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   J3E67_RS08600 Genome accession   NZ_CP071801
Coordinates   1764574..1766385 (+) Length   603 a.a.
NCBI ID   WP_144356377.1    Uniprot ID   A0A6B2FVY6
Organism   Lactobacillus gasseri strain HL75     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1759574..1771385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3E67_RS08575 (J3E67_001715) - 1759936..1760718 (-) 783 WP_039157653.1 threonine/serine exporter family protein -
  J3E67_RS08580 (J3E67_001716) - 1760721..1762289 (-) 1569 WP_144356375.1 ABC-F family ATP-binding cassette domain-containing protein -
  J3E67_RS08585 (J3E67_001717) - 1762298..1762690 (-) 393 WP_003649972.1 hypothetical protein -
  J3E67_RS08590 (J3E67_001718) - 1762913..1763182 (+) 270 WP_020807069.1 hypothetical protein -
  J3E67_RS08595 (J3E67_001719) - 1763287..1764411 (-) 1125 WP_144356376.1 LCP family protein -
  J3E67_RS08600 (J3E67_001720) pepF 1764574..1766385 (+) 1812 WP_144356377.1 oligoendopeptidase F Regulator
  J3E67_RS08605 (J3E67_001721) - 1766444..1767316 (-) 873 WP_144356378.1 Rpn family recombination-promoting nuclease/putative transposase -
  J3E67_RS08610 (J3E67_001722) - 1767460..1768971 (-) 1512 WP_186277805.1 L-lactate permease -
  J3E67_RS08615 (J3E67_001723) - 1769090..1769881 (-) 792 WP_144356380.1 metal ABC transporter permease -
  J3E67_RS08620 (J3E67_001724) - 1769881..1770540 (-) 660 WP_003649964.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 69007.89 Da        Isoelectric Point: 4.6629

>NTDB_id=547898 J3E67_RS08600 WP_144356377.1 1764574..1766385(+) (pepF) [Lactobacillus gasseri strain HL75]
MALPTRNEVSDDLKWDLSRVFKNDQEWEQEYKQVAQEIKNLSKFKGTLAKSGKDLYEGITAILAVNRRLEKVYVYATMSS
DVDTSNNHYLGFVAKAQSLANQMSAAIAFVDPEILSIPEETLAKFMQDEPRLENYRHRLEQITQKRPHTLPANEEKIIAD
AGDAMGTSANTFNVLTNSDMEYGYVQDEEGEMVQLSDGLYSLLIQSQDRNVRKNAFDVMYASYGQFENSLASTLSGEVKA
HNFNARVHKYNSAREAALSENSVPTAVYDTLIKEVNSHLDLLHRYVALRKKILGLKDLQMYDMYVPLTGKPVLSYNFEEA
KEEARKALAPLGEDYLKHVDYIFNNRVIDVVESQNKVTGAYSGGAYDTDPYELLNWEDNLDSLYTLVHETGHSVHSWYTR
NTQPYVYGDYPIFVAEIASTTNENILTEYFLDKITDPKTRAFVLNHYLDSFKGTLFRQTQFAEFEQFIHETDANGQPLTA
DVLDEFYGNLNQRYYGDSVEPGGEIAREWARIPHFYYNFYVYQYATGFAAATALANKVVHGTEQERDAYINFLKSGSSDY
PTEIMKRAGVDMTKADYLRDAFDTFEKRLNEFEKIVDELNAEK

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=547898 J3E67_RS08600 WP_144356377.1 1764574..1766385(+) (pepF) [Lactobacillus gasseri strain HL75]
ATGGCTCTTCCAACAAGAAATGAAGTATCCGATGATCTTAAGTGGGACTTAAGTCGTGTTTTTAAGAACGATCAAGAATG
GGAACAAGAATATAAGCAGGTTGCACAAGAAATCAAGAACTTAAGTAAATTTAAGGGAACACTTGCCAAATCTGGTAAAG
ATCTTTATGAAGGAATTACAGCAATTTTAGCTGTAAATCGACGCTTAGAAAAAGTATATGTTTACGCTACAATGTCAAGC
GATGTAGACACAAGCAATAATCATTACCTCGGTTTTGTTGCTAAAGCACAAAGCTTAGCTAATCAAATGAGTGCTGCAAT
TGCTTTTGTCGATCCTGAAATATTATCTATTCCAGAAGAAACCCTTGCTAAGTTTATGCAAGATGAACCACGTTTAGAAA
ATTATCGACACCGCCTTGAACAGATTACGCAAAAACGTCCTCATACCTTGCCAGCAAATGAAGAAAAAATCATTGCTGAC
GCTGGAGATGCAATGGGTACATCTGCTAATACCTTCAACGTCTTAACTAATTCTGATATGGAATATGGCTACGTCCAAGA
TGAAGAAGGTGAAATGGTTCAATTATCTGACGGGCTATATTCACTTTTAATCCAATCTCAAGACCGCAACGTCCGTAAAA
ACGCCTTTGACGTGATGTACGCAAGCTACGGACAGTTTGAAAACAGTCTTGCTTCAACTTTATCAGGTGAGGTAAAAGCT
CACAATTTTAATGCTCGCGTACATAAATACAATTCGGCTAGAGAAGCTGCTTTAAGTGAAAATAGTGTACCAACAGCTGT
TTACGATACATTGATCAAGGAAGTAAATAGCCACCTTGACTTACTTCACCGCTACGTTGCATTAAGAAAGAAAATTCTAG
GCTTAAAAGACCTTCAAATGTACGATATGTACGTACCATTAACCGGGAAGCCAGTTCTTTCTTATAACTTTGAGGAAGCA
AAAGAAGAAGCAAGAAAGGCCTTAGCTCCACTAGGCGAAGACTATTTAAAACATGTTGATTATATTTTTAATAACCGCGT
AATTGATGTGGTTGAAAGTCAAAACAAGGTTACTGGTGCATATTCAGGTGGTGCTTACGATACTGATCCATATGAACTAC
TTAACTGGGAAGATAACCTTGATTCACTCTACACTCTAGTTCATGAAACTGGTCACTCTGTCCACTCTTGGTATACAAGA
AACACTCAACCTTATGTCTATGGTGATTATCCAATTTTCGTTGCTGAAATTGCTTCAACTACTAATGAGAATATTTTAAC
CGAGTATTTCTTAGATAAAATTACTGATCCAAAGACCCGTGCATTTGTCTTAAACCATTATCTGGATTCGTTTAAAGGCA
CACTCTTCCGTCAAACTCAATTTGCGGAATTTGAACAATTTATTCATGAAACTGATGCTAATGGTCAGCCGCTAACAGCT
GACGTACTCGATGAATTTTATGGCAACTTAAACCAAAGATATTACGGCGACAGCGTTGAACCTGGTGGAGAAATTGCTAG
GGAATGGGCCCGTATTCCCCACTTCTACTACAACTTCTACGTTTACCAATACGCAACAGGTTTTGCGGCTGCAACTGCAC
TTGCTAATAAAGTTGTCCACGGTACTGAGCAAGAACGTGATGCTTATATTAATTTCTTAAAATCAGGTTCTTCAGATTAC
CCAACAGAAATTATGAAACGAGCTGGCGTTGATATGACTAAGGCTGATTACTTGAGGGATGCTTTTGATACTTTTGAAAA
ACGTCTTAATGAATTTGAAAAAATCGTTGATGAATTAAACGCTGAAAAGTAG

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(203-583)

Oligopeptidase F (Peptidase_M3_N)

(113-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6B2FVY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.602

98.342

0.507