Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   OSCIL6304_RS22750 Genome accession   NC_019693
Coordinates   5904586..5906178 (-) Length   530 a.a.
NCBI ID   WP_232251372.1    Uniprot ID   -
Organism   Oscillatoria acuminata PCC 6304     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5899586..5911178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSCIL6304_RS34640 (Oscil6304_4609) - 5901066..5901206 (+) 141 WP_015150741.1 hypothetical protein -
  OSCIL6304_RS22740 (Oscil6304_4611) - 5902030..5903034 (+) 1005 WP_015150743.1 RNA polymerase sigma factor, RpoD/SigA family -
  OSCIL6304_RS22745 (Oscil6304_4612) - 5903282..5904466 (+) 1185 WP_015150744.1 RRXRR domain-containing protein -
  OSCIL6304_RS22750 (Oscil6304_4613) comA 5904586..5906178 (-) 1593 WP_232251372.1 phospholipase D-like domain-containing protein Machinery gene
  OSCIL6304_RS22755 (Oscil6304_4614) - 5906740..5907141 (+) 402 WP_044195776.1 hypothetical protein -
  OSCIL6304_RS34645 - 5907155..5907310 (+) 156 WP_156823943.1 hypothetical protein -
  OSCIL6304_RS22760 (Oscil6304_4615) - 5907345..5908523 (+) 1179 WP_015150747.1 cysteine desulfurase family protein -
  OSCIL6304_RS22765 (Oscil6304_4616) cydB 5909120..5910130 (-) 1011 WP_015150748.1 cytochrome d ubiquinol oxidase subunit II -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58375.72 Da        Isoelectric Point: 5.4558

>NTDB_id=54787 OSCIL6304_RS22750 WP_232251372.1 5904586..5906178(-) (comA) [Oscillatoria acuminata PCC 6304]
MATLGLIGSGCEEIQPTLHRLPPLPQDPFVEVYFNQNPVLDYSEPYRGITRSGDDLEQLIVDTINSATSTVEVAVQEFQL
PKIAQAIARQHQSGVRVRVILENTYNQALSELTPHQVARLDERDKDRYEEWRHLIDRNQDGSLSPEEIAQGDALIILKNA
GVPLVDDTADGSKGSGLMHHKFAIADGRMVIVTSANFTTSDIHGDFLSDASRGNPNNLLKIESPALANLFQQEFNLMWGD
GPGGQPDSLFGVQKPFRPKQWVNLGASSVGVQFAPTGARIPWAQSVNGAIANTLNRATQSVDLALFVFSKQQLSDTLYAR
HRTGVRVRALIDPSFAYRSYSEGLDMMGVALPNQNCKYDQGNQPWSTPLDTVGVPQLPPGDRLHHKFALLDDRIVITGSH
NWSAAANSRNDETLLVIDSPIVAAHFRREFERLYSTALLGLPTHIEAKIQQQIQQCGSPTPVPALPPSARINVNRATQEE
LEELPGIGPALAARMIATRQEQPFTSVEDLQRVSGIGPTLSERLRDRVTF

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=54787 OSCIL6304_RS22750 WP_232251372.1 5904586..5906178(-) (comA) [Oscillatoria acuminata PCC 6304]
GTGGCAACTTTGGGCCTGATCGGAAGCGGTTGCGAAGAAATTCAACCCACCCTGCATCGACTCCCGCCTCTACCGCAAGA
TCCCTTTGTGGAGGTTTATTTTAACCAAAATCCAGTCCTGGATTACTCTGAGCCTTACCGAGGCATCACGCGATCGGGAG
ATGATTTGGAACAGTTGATTGTGGATACCATCAATAGCGCCACCTCAACGGTAGAGGTAGCTGTTCAGGAGTTCCAGTTG
CCCAAGATTGCTCAGGCGATCGCCCGTCAGCATCAATCCGGTGTCAGGGTCCGGGTGATTTTGGAAAATACCTATAACCA
AGCCCTCAGTGAGTTGACCCCACACCAAGTCGCCCGTCTGGATGAACGCGACAAAGATCGCTATGAAGAGTGGCGTCACC
TAATCGATCGCAACCAGGATGGTTCCCTCAGTCCAGAGGAAATCGCCCAGGGGGATGCTTTAATCATTTTAAAAAATGCC
GGAGTGCCTTTAGTTGACGATACGGCAGATGGCTCCAAAGGCAGCGGGTTGATGCACCACAAATTTGCGATCGCCGATGG
TCGCATGGTGATCGTCACTTCGGCCAATTTTACCACCAGTGATATCCACGGAGATTTTCTCTCTGACGCCAGTCGCGGCA
ATCCCAATAATTTACTCAAAATTGAGAGTCCGGCATTGGCAAATTTATTCCAACAAGAGTTTAACCTGATGTGGGGGGAT
GGCCCTGGCGGTCAGCCGGATAGTCTGTTCGGAGTCCAAAAACCGTTTCGCCCGAAGCAGTGGGTTAATTTGGGGGCTAG
TTCGGTGGGGGTGCAATTTGCGCCGACAGGGGCGCGCATTCCTTGGGCGCAGAGTGTCAATGGGGCGATCGCCAATACGT
TGAATCGAGCCACTCAATCCGTGGACCTGGCCCTGTTTGTCTTCTCAAAACAACAATTGAGCGATACGCTTTACGCTCGT
CATCGCACGGGGGTGCGGGTTCGTGCTCTGATTGATCCCAGTTTTGCCTATCGCAGTTATAGCGAAGGGTTGGACATGAT
GGGGGTGGCTTTACCCAATCAAAATTGTAAGTATGATCAGGGTAACCAACCTTGGTCTACTCCGTTGGATACGGTAGGCG
TTCCCCAGTTACCTCCGGGCGATCGCCTCCATCATAAATTTGCCCTCTTGGACGATCGCATCGTGATCACCGGGTCTCAT
AACTGGTCAGCAGCCGCTAATTCTCGCAATGATGAAACCCTATTGGTCATTGACTCTCCCATCGTCGCAGCCCATTTTAG
ACGAGAGTTTGAACGACTTTATAGCACGGCTCTTTTGGGTTTACCCACCCACATTGAGGCCAAAATCCAACAGCAGATTC
AGCAATGTGGTTCCCCCACTCCGGTTCCCGCATTACCTCCATCAGCCCGCATCAATGTGAATCGAGCCACTCAGGAGGAG
TTAGAAGAGTTACCGGGAATTGGTCCGGCTTTAGCTGCTCGAATGATTGCCACCAGGCAAGAGCAACCGTTCACGTCGGT
AGAAGATTTGCAACGGGTTTCAGGAATTGGTCCCACCCTATCAGAACGCTTGCGCGATCGCGTCACCTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(470-529)

PLD-like domain (PLDc_2)

(60-238)

PLD-like domain (PLDc_2)

(291-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

50.462

100

0.515

Multiple sequence alignment