Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   J3U78_RS12375 Genome accession   NZ_CP071798
Coordinates   2405356..2406306 (-) Length   316 a.a.
NCBI ID   WP_207958963.1    Uniprot ID   A0A975GY77
Organism   Sporosarcina sp. Te-1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2400356..2411306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3U78_RS12355 (J3U78_12355) - 2401363..2402502 (-) 1140 WP_207958959.1 FapA family protein -
  J3U78_RS12360 (J3U78_12360) - 2402667..2403632 (-) 966 WP_207958960.1 siderophore ABC transporter substrate-binding protein -
  J3U78_RS12365 (J3U78_12365) - 2403655..2404416 (-) 762 WP_207958961.1 ABC transporter ATP-binding protein -
  J3U78_RS12370 (J3U78_12370) - 2404413..2405363 (-) 951 WP_207958962.1 iron chelate uptake ABC transporter family permease subunit -
  J3U78_RS12375 (J3U78_12375) ceuB 2405356..2406306 (-) 951 WP_207958963.1 ABC transporter permease Machinery gene
  J3U78_RS12380 (J3U78_12380) - 2406819..2407670 (-) 852 WP_207958964.1 DUF6612 family protein -
  J3U78_RS12385 (J3U78_12385) hflX 2407936..2409207 (-) 1272 WP_207958965.1 GTPase HflX -
  J3U78_RS12390 (J3U78_12390) - 2409227..2409937 (-) 711 WP_207958966.1 VOC family protein -
  J3U78_RS12395 (J3U78_12395) - 2410079..2410921 (+) 843 WP_207958967.1 response regulator -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 35023.50 Da        Isoelectric Point: 10.2013

>NTDB_id=547865 J3U78_RS12375 WP_207958963.1 2405356..2406306(-) (ceuB) [Sporosarcina sp. Te-1]
MKKRYLIIALILLSFLSLFVGVSRISPMDLLDFKSEETEIFLISRLPRLVAILLAGAGMSIAGLIMQQLSRNKFVSPTTA
GTLDATRLGILVSMLLFTNASMMEKMIVAFAFALAGTLLFMQILDRIKFKDAIFIPLVGLMFGNILSSITTFFAYKSNVI
QNMSAWLQGDFSMIMKGRYELLYISIPVLIITYLYANRFTVAGMGEDFSKNLGLAYKRIVNIGLILVALITTTVVLTVGM
IPFLGLIIPNIVSIFKGDHLQKTLPHTALLGAIFLLICDILGRVIIYPYEISISLMVGVIGSGIFLYLLFRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=547865 J3U78_RS12375 WP_207958963.1 2405356..2406306(-) (ceuB) [Sporosarcina sp. Te-1]
ATGAAGAAACGCTATTTGATCATCGCACTCATCTTGCTCTCATTCCTATCGTTATTTGTAGGCGTGAGCCGTATATCACC
GATGGATCTGCTAGATTTCAAGTCGGAGGAAACCGAGATTTTCCTAATAAGCCGTTTGCCTAGATTGGTTGCGATTTTGC
TTGCCGGCGCAGGAATGAGCATCGCCGGCCTCATTATGCAACAGCTTAGCCGGAATAAATTCGTTTCGCCAACGACAGCA
GGTACACTCGATGCCACTCGTTTGGGCATTCTCGTCTCGATGTTATTGTTCACGAACGCCTCCATGATGGAGAAAATGAT
CGTCGCTTTTGCATTTGCGCTTGCCGGCACGCTGTTGTTCATGCAAATCCTTGACCGGATAAAGTTCAAGGATGCGATTT
TCATTCCACTGGTCGGTCTGATGTTCGGGAATATATTGTCGTCGATCACGACGTTCTTTGCGTATAAATCGAATGTCATC
CAAAATATGTCGGCCTGGTTGCAAGGGGACTTTTCGATGATCATGAAAGGGCGTTATGAACTTTTATACATAAGCATCCC
GGTGCTTATCATCACGTATTTGTATGCCAACCGGTTCACAGTGGCCGGAATGGGCGAGGATTTTTCAAAGAATCTGGGTC
TTGCGTACAAACGTATCGTCAACATCGGTTTGATTCTCGTTGCGTTAATTACAACGACGGTCGTTTTGACAGTCGGGATG
ATCCCGTTTCTCGGATTGATCATTCCGAATATCGTTTCGATCTTCAAAGGGGATCACTTGCAGAAAACATTACCGCACAC
GGCATTGTTGGGGGCTATCTTCCTGCTGATATGTGATATTCTTGGCAGGGTTATCATTTATCCTTATGAGATATCCATTA
GTTTGATGGTCGGAGTAATCGGCAGCGGAATCTTCCTCTATCTGTTGTTTAGGAGGAAAGCCTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.355

99.051

0.528