Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   J3U78_RS02435 Genome accession   NZ_CP071798
Coordinates   498527..500224 (+) Length   565 a.a.
NCBI ID   WP_207961141.1    Uniprot ID   A0A975GZG5
Organism   Sporosarcina sp. Te-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 493527..505224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3U78_RS02410 (J3U78_02410) - 493805..494047 (+) 243 WP_207961136.1 exodeoxyribonuclease VII small subunit -
  J3U78_RS02415 (J3U78_02415) - 494040..494924 (+) 885 WP_207961137.1 polyprenyl synthetase family protein -
  J3U78_RS02420 (J3U78_02420) dxs 495051..496952 (+) 1902 WP_207961138.1 1-deoxy-D-xylulose-5-phosphate synthase -
  J3U78_RS02425 (J3U78_02425) - 496949..497767 (+) 819 WP_207961139.1 TlyA family RNA methyltransferase -
  J3U78_RS02430 (J3U78_02430) ahrC 497839..498288 (+) 450 WP_207961140.1 transcriptional regulator AhrC/ArgR -
  J3U78_RS02435 (J3U78_02435) recN 498527..500224 (+) 1698 WP_207961141.1 DNA repair protein RecN Machinery gene
  J3U78_RS02440 (J3U78_02440) - 500509..501474 (+) 966 WP_207961142.1 SpoIVB peptidase S55 domain-containing protein -
  J3U78_RS02445 (J3U78_02445) spo0A 501719..502510 (+) 792 WP_207961143.1 sporulation transcription factor Spo0A -
  J3U78_RS02450 (J3U78_02450) - 502711..504279 (+) 1569 WP_207961144.1 DUF342 domain-containing protein -
  J3U78_RS02455 (J3U78_02455) - 504263..504982 (+) 720 WP_207961145.1 glycerophosphodiester phosphodiesterase family protein -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 63179.81 Da        Isoelectric Point: 4.8097

>NTDB_id=547856 J3U78_RS02435 WP_207961141.1 498527..500224(+) (recN) [Sporosarcina sp. Te-1]
MLRELSIRNFAIIDHLEVAFDEGLTVLTGETGAGKSIIIDAVQLLAGGRGSQEFIRHGAPKAELEGLFTIDDPNHPVFEK
LLDAGIESDEGMLILRRDLNTNGKSTCRINGKLVTIGILREIGAQLIDIHGQHDNQELMMEKRHIHLLDHFAGNALQQAL
DNYSELYSGYVKLKRKLEAATENEQQIAQRIDLYSFQLNEIDAAGLTIGEEEELEEEKNKLQHFHRLFERLNTAYESISG
DMHALDWVGSAMSDLEDAASVDKSLAVHAESVANSFYTLQDTAHDIKNLIDQMEFDPGRLDFVEGRLAQLLTLKRKYGSS
VEEILLYRDKIADELDQLIHRDERLEKGQEKLDQLVQDLEVEAMELSLIRQAAALQLETAILQQLKELHMEKASFEVRVS
QQPGIYDAKGFDEVAFFISTNVGEPMKPLVKIASGGELSRIMLALKTIFSKHQGITSIIFDEVDTGVSGRVAQAIAEKIA
MIATHSQVLCISHLPQVAAMADHHYLIKKEVKDDRTTTAIAEITGIDRTKELSRMLSGAEITELTLRHADELLSLADNRK
KAFRS

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=547856 J3U78_RS02435 WP_207961141.1 498527..500224(+) (recN) [Sporosarcina sp. Te-1]
TTGTTACGGGAATTATCAATCCGAAATTTTGCCATCATCGATCATCTCGAAGTGGCATTTGATGAAGGTCTGACTGTATT
GACAGGAGAAACTGGTGCCGGTAAATCGATCATCATTGATGCTGTCCAATTGCTTGCGGGCGGCAGAGGCTCTCAGGAGT
TCATCCGCCATGGGGCACCGAAAGCCGAGCTGGAAGGATTGTTTACCATTGACGATCCGAATCATCCGGTTTTTGAGAAG
TTGTTGGATGCTGGAATTGAATCCGATGAGGGAATGCTCATCCTTCGCCGGGATTTGAATACAAATGGAAAGTCGACATG
CCGTATAAACGGAAAACTTGTCACAATCGGCATATTGCGTGAAATCGGTGCGCAGTTGATCGACATCCATGGCCAGCATG
ACAATCAAGAGCTGATGATGGAAAAACGGCATATCCATTTGCTCGACCATTTTGCGGGGAACGCATTACAACAGGCTCTC
GATAATTATTCAGAATTGTATTCAGGTTACGTAAAGCTGAAAAGGAAGCTCGAGGCAGCAACTGAGAACGAACAACAAAT
AGCTCAGCGGATTGATCTTTATTCCTTCCAATTGAATGAAATCGATGCAGCGGGACTCACAATTGGAGAAGAAGAGGAAC
TGGAAGAGGAAAAAAATAAATTACAGCACTTTCATCGCCTGTTTGAACGGTTGAATACCGCTTATGAATCGATCAGTGGG
GATATGCATGCGTTGGACTGGGTCGGGTCGGCTATGAGTGATTTGGAAGATGCCGCCTCTGTCGATAAGTCGCTAGCTGT
CCATGCAGAATCTGTTGCAAATAGTTTCTACACGTTACAAGATACCGCCCATGATATAAAAAACTTGATCGATCAGATGG
AATTCGACCCGGGACGCTTGGATTTTGTGGAAGGCCGTTTGGCACAGCTGCTCACATTGAAACGGAAATATGGCAGTTCA
GTCGAAGAGATCTTGCTCTATCGCGATAAAATTGCGGATGAGTTAGACCAATTGATCCACCGGGATGAACGATTGGAGAA
AGGGCAAGAAAAACTGGACCAGCTTGTCCAAGACCTTGAAGTGGAAGCAATGGAACTCTCCTTGATCCGGCAAGCTGCTG
CGTTGCAATTGGAAACTGCCATTTTGCAACAGTTAAAGGAGCTTCATATGGAAAAGGCGTCCTTTGAAGTAAGAGTGAGC
CAGCAACCGGGAATATATGATGCAAAAGGATTTGATGAAGTGGCTTTCTTTATCTCGACAAATGTTGGCGAACCGATGAA
GCCGCTTGTTAAAATTGCTTCGGGTGGAGAATTGTCCAGAATCATGCTGGCGCTGAAGACCATCTTCTCCAAGCATCAAG
GCATTACATCAATCATTTTTGATGAAGTGGACACAGGTGTCAGCGGACGGGTGGCGCAAGCCATTGCCGAGAAGATCGCC
ATGATCGCGACGCATTCCCAAGTACTTTGCATTTCACATTTACCACAAGTTGCCGCAATGGCCGATCACCATTATCTCAT
TAAGAAAGAAGTAAAGGATGATCGGACAACAACTGCGATTGCCGAAATTACAGGAATAGATCGGACAAAAGAACTGTCCA
GAATGCTTTCCGGTGCTGAGATTACCGAGCTTACCTTGCGCCATGCTGATGAATTGCTGTCATTGGCAGACAATCGAAAA
AAAGCGTTCCGTTCGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.265

100

0.531