Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JZM58_RS25845 Genome accession   NZ_CP071797
Coordinates   5806062..5807429 (-) Length   455 a.a.
NCBI ID   WP_007950985.1    Uniprot ID   J2XTJ9
Organism   Pseudomonas fluorescens strain YK-310     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5801062..5812429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZM58_RS25820 (JZM58_25820) - 5801423..5802118 (+) 696 WP_207983986.1 GntR family transcriptional regulator -
  JZM58_RS25825 (JZM58_25825) yjiA 5802132..5803106 (-) 975 WP_207983987.1 GTPase -
  JZM58_RS25830 (JZM58_25830) - 5803266..5803463 (-) 198 WP_003228401.1 YbdD/YjiX family protein -
  JZM58_RS25835 (JZM58_25835) - 5803479..5805545 (-) 2067 WP_007950983.1 carbon starvation CstA family protein -
  JZM58_RS25840 (JZM58_25840) - 5805705..5806061 (+) 357 WP_115079275.1 PilZ domain-containing protein -
  JZM58_RS25845 (JZM58_25845) radA 5806062..5807429 (-) 1368 WP_007950985.1 DNA repair protein RadA Machinery gene
  JZM58_RS25850 (JZM58_25850) katB 5807573..5809111 (-) 1539 WP_207983988.1 catalase KatB -
  JZM58_RS25855 (JZM58_25855) mscL 5809397..5809810 (+) 414 WP_045121628.1 large-conductance mechanosensitive channel protein MscL -
  JZM58_RS25860 (JZM58_25860) - 5809843..5810619 (-) 777 WP_207983989.1 ferredoxin--NADP reductase -
  JZM58_RS25865 (JZM58_25865) - 5810927..5811634 (+) 708 WP_207983990.1 LuxR C-terminal-related transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48715.17 Da        Isoelectric Point: 6.8987

>NTDB_id=547842 JZM58_RS25845 WP_007950985.1 5806062..5807429(-) (radA) [Pseudomonas fluorescens strain YK-310]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMVESGGAAAPSGRTGWAGQQAQIKTLAEVSIEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLAKSMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARQEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQIIAVTRLEQALDSLFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=547842 JZM58_RS25845 WP_007950985.1 5806062..5807429(-) (radA) [Pseudomonas fluorescens strain YK-310]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCAACCTTTCCCAAGTGGGCGGGGCAGTGCGGCGAATG
CGGCGCCTGGAACACCCTGACCGAAACCATGGTCGAGAGCGGCGGTGCGGCCGCCCCGAGCGGGCGTACCGGCTGGGCGG
GACAGCAGGCCCAGATCAAGACCCTGGCCGAAGTCAGCATCGAAGAGATTCCGCGTTTTTCCACAGCCTCCGGCGAGCTG
GACCGAGTGCTCGGCGGTGGTCTGGTGGACGGTTCGGTGGTGCTGATCGGCGGCGATCCGGGCATCGGCAAATCAACGAT
CCTTTTGCAGACCCTGTGCAACCTCGCCAAGAGCATGCCGGCGCTGTACGTCACCGGTGAGGAATCCCAGCAACAGGTCG
CCATGCGCGCGCGCCGCCTGGGCCTGCCGCAGGATCAACTGCGGGTCATGACCGAAACCTGTATCGAAACCATCATCGCC
ACCGCCCGTCAGGAAAAACCCAAGGTGATGGTGATCGACTCGATCCAGACGATCTTCACCGAACAACTGCAATCGGCGCC
GGGCGGCGTGTCCCAAGTACGCGAAAGTGCGGCGTTGCTTGTGCGTTACGCCAAGCAAAGCGGCACGGCGATTTTCCTGG
TCGGCCACGTGACCAAGGAAGGCGCATTGGCCGGCCCGCGCGTTCTGGAGCACATGGTCGATACCGTGCTGTATTTCGAA
GGCGAGTCCGATGGCCGGTTGCGTTTGCTGCGGGCGGTGAAAAACCGTTTCGGCGCGGTCAACGAGCTGGGCGTGTTCGG
CATGACCGACAAGGGCTTGAAGGAAGTCTCCAACCCTTCGGCGATTTTTCTCACCCGCGCTCAGGAAGAAGTCCCGGGCA
GTGTGGTGATGGCGACGTGGGAAGGCACCCGGCCGATGCTGGTGGAGGTTCAGGCGCTGGTGGATGACAGCCATCTGGCC
AACCCGCGTCGGGTCACCTTGGGTCTGGACCAGAATCGTCTGGCGATGCTGTTGGCGGTGCTGCACCGTCATGGCGGCAT
TCCGACCCACGATCAGGACGTGTTCCTCAACGTGGTCGGCGGGGTGAAAGTACTGGAAACCGCGTCTGACTTGGCCTTGA
TGGCCGCCGTCATGTCGAGCCTGCGCAACCGTCCGTTACCCCATGACTTGCTGGTGTTCGGTGAAGTCGGCCTGTCCGGC
GAAGTGCGCCCGGTACCGAGCGGTCAGGAGCGATTGAAGGAAGCCGCCAAGCACGGCTTCAAGCGTGCGATCGTGCCCAA
GGGCAACGCGCCGAAGGAAGCGCCGCCAGGCTTGCAGATCATTGCAGTGACGCGTCTGGAGCAGGCGCTGGATTCACTCT
TCGAGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(81-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J2XTJ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.234

100

0.495
  radA Streptococcus pneumoniae Rx1

46.304

100

0.468
  radA Streptococcus pneumoniae R6

46.304

100

0.468
  radA Streptococcus pneumoniae TIGR4

46.304

100

0.468
  radA Streptococcus pneumoniae D39

46.304

100

0.468
  radA Streptococcus mitis SK321

46.491

100

0.466
  radA Streptococcus mitis NCTC 12261

46.272

100

0.464