Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   J2887_RS14375 Genome accession   NZ_CP071785
Coordinates   3158263..3159777 (+) Length   504 a.a.
NCBI ID   WP_228752882.1    Uniprot ID   -
Organism   Marinobacter sp. CA1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3153263..3164777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J2887_RS14345 (J2887_14305) - 3153591..3154394 (-) 804 WP_227171785.1 ABC transporter ATP-binding protein -
  J2887_RS14350 (J2887_14310) - 3154590..3155558 (+) 969 WP_227171786.1 KpsF/GutQ family sugar-phosphate isomerase -
  J2887_RS14355 (J2887_14315) - 3155558..3156115 (+) 558 WP_227171787.1 KdsC family phosphatase -
  J2887_RS14360 (J2887_14320) lptC 3156115..3156714 (+) 600 WP_227171788.1 LPS export ABC transporter periplasmic protein LptC -
  J2887_RS14365 (J2887_14325) lptA 3156752..3157234 (+) 483 WP_324197219.1 lipopolysaccharide transport periplasmic protein LptA -
  J2887_RS14370 (J2887_14330) lptB 3157247..3157972 (+) 726 WP_227171790.1 LPS export ABC transporter ATP-binding protein -
  J2887_RS14375 (J2887_14335) rpoN/rpoN1 3158263..3159777 (+) 1515 WP_228752882.1 RNA polymerase factor sigma-54 Machinery gene
  J2887_RS14380 (J2887_14340) hpf 3159895..3160203 (+) 309 WP_227171792.1 ribosome hibernation promoting factor -
  J2887_RS14385 (J2887_14345) ptsN 3160291..3160755 (+) 465 WP_227171793.1 PTS IIA-like nitrogen regulatory protein PtsN -
  J2887_RS14390 (J2887_14350) rapZ 3160787..3161665 (+) 879 WP_227171794.1 RNase adapter RapZ -
  J2887_RS14395 (J2887_14355) - 3161662..3161931 (+) 270 WP_227171795.1 HPr family phosphocarrier protein -
  J2887_RS14400 (J2887_14360) mgtE 3162152..3163513 (+) 1362 WP_227171796.1 magnesium transporter -
  J2887_RS14405 (J2887_14365) yjgA 3163543..3164070 (+) 528 WP_227171797.1 ribosome biogenesis factor YjgA -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 57006.50 Da        Isoelectric Point: 4.4350

>NTDB_id=547761 J2887_RS14375 WP_228752882.1 3158263..3159777(+) (rpoN/rpoN1) [Marinobacter sp. CA1]
MKASLQLKLGQSLTMTPQLQQAIRLLQLSTLDLQQEIQQALDSNPMLETQEDDDRAEAEQNDDRNDAEDGQDQDASATAD
DSWDDDSSQEWEADNNGSENIPDDLPVDTAWDDIYQPSPAPASRGDDEGDSDFESRNSVSETLHDHLEWQLNLTPMGDRD
RAIAHALLDAVDERGYLTSPLDEIHSGLMDDADEDPVELDEIEAVLRRLQHFDPAGVFARDLQECLLIQLNQLPPDTPWL
PQARLVITHYINLLGNRDYAQLLRRSRLKEDQLRDVLALITQLNPRPGSAIDQAEPDYVIPDVIVRKHQGRWRVELNPEI
APRIRVNASYASLIRRADSSADNTYMRDQLQEAKWFIKSLQSRNETLLKVATRIVEHQQGFLDHGEEAMKPLILSDIAQA
VEMHESTISRVTTQKYMHTPRGIFELKYFFSSHVSTDEGGECSSTAIRAMIKKLIAAETPKKPLSDSKIAAMLGEQGIKV
ARRTVAKYREAMHIPPSNERKRLV

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=547761 J2887_RS14375 WP_228752882.1 3158263..3159777(+) (rpoN/rpoN1) [Marinobacter sp. CA1]
ATGAAAGCCTCACTTCAGCTAAAACTGGGCCAAAGCCTGACCATGACGCCCCAGTTGCAACAGGCGATCAGGCTGCTTCA
ACTCTCCACCCTGGATCTCCAGCAGGAAATCCAACAGGCGCTGGATTCCAACCCCATGCTGGAAACCCAGGAAGACGACG
ACCGCGCCGAGGCAGAGCAGAACGACGACCGCAACGACGCTGAAGACGGTCAGGACCAGGACGCCAGCGCCACCGCAGAT
GACAGCTGGGATGACGACAGCAGCCAGGAGTGGGAGGCCGACAACAACGGCTCCGAGAACATTCCCGACGACCTGCCGGT
CGATACCGCCTGGGACGACATCTACCAGCCCTCTCCTGCCCCCGCCAGCCGCGGCGACGATGAGGGTGACAGCGATTTCG
AGTCCCGCAACTCGGTCTCCGAGACCCTTCACGATCATCTGGAATGGCAGCTCAACCTGACCCCCATGGGTGACCGGGAC
CGGGCCATTGCCCACGCCCTGCTGGACGCAGTGGACGAGCGCGGCTACCTGACCTCCCCGCTGGACGAAATCCACTCCGG
GTTGATGGACGACGCCGACGAGGACCCGGTGGAGCTCGACGAGATCGAAGCGGTACTGCGTCGGCTGCAGCATTTCGACC
CCGCCGGTGTGTTTGCCCGCGATCTGCAGGAATGCCTGCTGATCCAGCTCAACCAGCTGCCACCTGACACCCCCTGGCTG
CCCCAGGCTCGCCTGGTGATCACTCACTACATCAACCTGCTGGGCAACCGCGACTACGCCCAACTGCTGCGGCGCAGCCG
GCTGAAAGAAGACCAGCTGCGGGACGTTCTGGCCTTGATCACCCAGCTCAACCCGCGCCCGGGCAGCGCCATTGATCAGG
CTGAGCCGGATTACGTCATTCCCGATGTCATCGTGCGCAAGCACCAGGGACGCTGGCGGGTGGAACTGAACCCGGAGATT
GCGCCGCGCATTCGCGTCAACGCCAGCTACGCGTCGTTGATCCGCCGGGCCGACAGCAGCGCCGACAACACCTACATGCG
GGACCAGCTGCAGGAAGCCAAGTGGTTCATCAAGAGCCTGCAGAGCCGCAACGAAACCCTGCTCAAGGTGGCCACCCGCA
TTGTTGAGCACCAGCAGGGCTTCCTCGATCACGGCGAGGAGGCGATGAAGCCACTGATCCTCTCCGACATCGCCCAAGCG
GTGGAAATGCATGAATCCACGATTTCCCGGGTCACCACCCAGAAGTACATGCATACCCCCCGGGGCATCTTCGAGCTGAA
GTACTTTTTCTCCAGCCACGTCAGCACCGATGAGGGCGGAGAATGCTCGTCCACCGCCATCCGGGCGATGATCAAAAAAC
TGATTGCAGCAGAAACCCCAAAAAAGCCATTGAGCGACAGCAAAATTGCCGCCATGCTAGGGGAACAGGGAATCAAAGTG
GCCCGGCGCACCGTCGCCAAGTATCGGGAGGCCATGCACATTCCCCCGTCAAACGAACGGAAGAGATTGGTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(344-502)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(133-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

46.718

100

0.48