Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   J4G46_RS13630 Genome accession   NZ_CP071771
Coordinates   2840311..2841468 (+) Length   385 a.a.
NCBI ID   WP_004970116.1    Uniprot ID   A0A2A5PDZ9
Organism   Acinetobacter towneri strain GX7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2835311..2846468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4G46_RS13615 (J4G46_13615) - 2836981..2839053 (-) 2073 WP_208012004.1 TonB-dependent copper receptor -
  J4G46_RS13620 (J4G46_13620) - 2839117..2839551 (-) 435 WP_180052258.1 DUF2946 family protein -
  J4G46_RS13625 (J4G46_13625) def 2839659..2840189 (-) 531 WP_154321169.1 peptide deformylase -
  J4G46_RS13630 (J4G46_13630) tsaP 2840311..2841468 (+) 1158 WP_004970116.1 LysM peptidoglycan-binding domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 42132.36 Da        Isoelectric Point: 9.0905

>NTDB_id=547690 J4G46_RS13630 WP_004970116.1 2840311..2841468(+) (tsaP) [Acinetobacter towneri strain GX7]
MKKVLTDTSSFRVLGFKKQVLALAVCLIVGLGAISVAEAAPARNINPPALKASAPNVYVVKKGDTLWDISKKFLNNPLRW
PEIWASNRHVKNPHWIFPGDRLLMCTYEGRPIIGKDEGDGCEGIIRRYAGKSTNLQPQIRVESLNNTIPVIPLDYIKHWL
ERSSIIAADALQGTPYILGTSDQRVLAAKGQSVYARGAGLEVGQRYGVYREGEPYMLTDANGQKFNAGIELTQVAAGIAV
RGENDITTLELTDTYNAEVRRGDRVLPIYDPMLPTLFYPTHAENVSTGGQVLRVMGSIGTAAKHSVVAIDRGTLHGVQSG
HVFSVAQKGEVVTDPKTKERVQLPGERIGNIMVFKSFDHISYAYVLDSELPIKVGASLQAPRMDD

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=547690 J4G46_RS13630 WP_004970116.1 2840311..2841468(+) (tsaP) [Acinetobacter towneri strain GX7]
ATGAAAAAGGTTTTGACAGACACATCCTCTTTTCGTGTCTTGGGGTTTAAAAAGCAAGTTTTAGCACTCGCGGTATGTCT
CATAGTGGGACTTGGTGCGATCAGTGTGGCTGAAGCAGCACCTGCACGAAACATCAATCCGCCTGCCTTAAAAGCCAGCG
CACCAAATGTGTATGTGGTAAAAAAAGGCGATACCTTATGGGATATTTCCAAAAAATTCCTGAACAACCCATTACGTTGG
CCTGAAATTTGGGCAAGTAACCGTCACGTAAAAAATCCACACTGGATTTTCCCAGGTGACCGTTTGTTGATGTGTACCTA
CGAAGGTCGCCCTATTATTGGTAAAGATGAAGGCGATGGCTGTGAAGGCATTATTCGTCGTTATGCAGGCAAGAGCACCA
ATTTACAGCCGCAAATTCGCGTGGAGTCTTTAAATAATACCATTCCTGTGATTCCACTTGACTACATCAAACACTGGTTA
GAGCGCAGCAGCATTATTGCCGCAGATGCGTTACAAGGCACACCATATATTTTAGGTACTTCTGATCAACGTGTTTTAGC
TGCTAAAGGTCAAAGTGTGTATGCACGTGGTGCAGGTCTGGAAGTAGGTCAACGCTACGGTGTATATCGTGAAGGCGAAC
CGTACATGCTGACCGATGCCAATGGTCAAAAATTCAATGCAGGCATTGAACTCACTCAAGTTGCTGCAGGTATTGCAGTA
CGTGGTGAAAATGACATCACCACACTTGAATTGACCGATACCTACAATGCCGAAGTGCGTCGTGGTGATCGCGTCTTACC
AATTTATGACCCAATGCTGCCAACCTTGTTCTACCCAACGCATGCTGAAAATGTCAGCACAGGTGGTCAGGTGCTACGTG
TGATGGGTTCGATTGGTACTGCAGCAAAACACAGTGTTGTGGCAATTGATCGCGGTACATTACATGGCGTGCAATCTGGT
CATGTGTTTAGCGTAGCGCAAAAAGGCGAAGTGGTCACCGACCCGAAAACCAAAGAACGTGTTCAGCTTCCAGGCGAACG
TATTGGCAATATCATGGTCTTCAAGAGCTTTGACCACATTAGCTATGCCTATGTTTTAGACAGTGAATTACCAATTAAAG
TCGGTGCGAGCTTACAAGCACCACGAATGGACGACTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A5PDZ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

64.935

100

0.649