Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   J4G46_RS13235 Genome accession   NZ_CP071771
Coordinates   2751727..2752053 (-) Length   108 a.a.
NCBI ID   WP_070155499.1    Uniprot ID   A0A1E8DZH8
Organism   Acinetobacter towneri strain GX7     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2746727..2757053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4G46_RS13215 (J4G46_13215) - 2746950..2747600 (-) 651 WP_167845712.1 FHA domain-containing protein -
  J4G46_RS13220 (J4G46_13220) gspD 2747670..2749925 (-) 2256 WP_104852930.1 type II secretion system secretin GspD -
  J4G46_RS13225 (J4G46_13225) - 2749985..2750824 (-) 840 WP_179994904.1 type II secretion system protein N -
  J4G46_RS13230 (J4G46_13230) gspN 2750824..2751564 (-) 741 WP_096901906.1 type II secretion system protein N -
  J4G46_RS13235 (J4G46_13235) hns 2751727..2752053 (-) 327 WP_070155499.1 H-NS histone family protein Regulator
  J4G46_RS13240 (J4G46_13240) - 2752199..2752630 (-) 432 WP_096901909.1 thioesterase family protein -
  J4G46_RS13245 (J4G46_13245) - 2752640..2753833 (-) 1194 WP_208011983.1 heme biosynthesis protein HemY -
  J4G46_RS13250 (J4G46_13250) - 2753834..2754670 (-) 837 WP_208011984.1 hypothetical protein -
  J4G46_RS13255 (J4G46_13255) - 2754667..2755446 (-) 780 WP_004975746.1 uroporphyrinogen-III synthase -
  J4G46_RS13260 (J4G46_13260) hemC 2755468..2756388 (-) 921 WP_096901970.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12178.04 Da        Isoelectric Point: 9.8659

>NTDB_id=547685 J4G46_RS13235 WP_070155499.1 2751727..2752053(-) (hns) [Acinetobacter towneri strain GX7]
MMPDISNLSVEQLKRLQAEAEALIATKKDQAIEDAYNQILAIADNLGLSIEQILEVGESKRKKSPRKTVAPRYRSKTNPT
DTWTGRGKKPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=547685 J4G46_RS13235 WP_070155499.1 2751727..2752053(-) (hns) [Acinetobacter towneri strain GX7]
ATGATGCCTGATATTAGCAATTTGTCTGTAGAACAGTTAAAGCGTTTACAAGCTGAAGCGGAAGCATTAATTGCCACGAA
AAAAGATCAAGCGATTGAAGATGCCTATAATCAAATTTTAGCGATTGCAGACAATTTGGGTTTAAGCATTGAGCAGATTT
TGGAAGTTGGCGAAAGCAAGCGTAAGAAAAGCCCGCGTAAAACAGTAGCGCCACGTTATCGTAGCAAAACAAATCCTACA
GATACTTGGACTGGTCGTGGTAAAAAACCACGCTGGTTAGTCGCTGAATTAGAAAAAGGCGCAAAACTTGAAGATTTTCT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E8DZH8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

75.926

100

0.759