Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   LRX86_RS10400 Genome accession   NZ_CP088895
Coordinates   2183982..2185970 (-) Length   662 a.a.
NCBI ID   WP_000211077.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DETAB-R21     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2178982..2190970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRX86_RS10370 (LRX86_10365) trmA 2179546..2180631 (+) 1086 WP_000204676.1 tRNA (uridine(54)-C5)-methyltransferase TrmA -
  LRX86_RS10375 (LRX86_10370) - 2180880..2181110 (+) 231 WP_000011679.1 hypothetical protein -
  LRX86_RS10380 (LRX86_10375) - 2181146..2181892 (-) 747 WP_000699319.1 phosphodiester glycosidase family protein -
  LRX86_RS10385 (LRX86_10380) - 2182079..2182669 (+) 591 WP_001187976.1 lecithin retinol acyltransferase family protein -
  LRX86_RS10390 (LRX86_10385) - 2182715..2183305 (-) 591 WP_000550331.1 YceI family protein -
  LRX86_RS10395 (LRX86_10390) - 2183520..2183927 (+) 408 WP_000248288.1 OsmC family protein -
  LRX86_RS10400 (LRX86_10395) recP/tkt 2183982..2185970 (-) 1989 WP_000211077.1 transketolase Machinery gene
  LRX86_RS10405 (LRX86_10400) metK 2186494..2187660 (+) 1167 WP_001209544.1 methionine adenosyltransferase -
  LRX86_RS10410 (LRX86_10405) - 2187784..2188032 (-) 249 WP_000966850.1 hypothetical protein -
  LRX86_RS10415 (LRX86_10410) - 2188291..2188476 (+) 186 WP_000192622.1 hypothetical protein -
  LRX86_RS10420 (LRX86_10415) - 2188540..2189100 (-) 561 WP_001050729.1 FxsA family protein -
  LRX86_RS10425 (LRX86_10420) - 2189499..2190323 (+) 825 WP_001021776.1 OXA-51 family carbapenem-hydrolyzing class D beta-lactamase OXA-91 -
  LRX86_RS10430 (LRX86_10425) - 2190395..2190940 (-) 546 WP_001109740.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 662 a.a.        Molecular weight: 72244.65 Da        Isoelectric Point: 4.9694

>NTDB_id=547648 LRX86_RS10400 WP_000211077.1 2183982..2185970(-) (recP/tkt) [Acinetobacter baumannii strain DETAB-R21]
MTTPLNERRIANAIRVLAMDAVQQANSGHPGAPMGMADIADVVWREFLNHNPNNPQWANRDRFVLSNGHGSMLQYALLHL
TGYDLSIEDLKQFRQLHSKTPGHPEYGYAPGIETTTGPLGQGIANGVGFALAEKTLAAQFNKDDLKVVDHFTYCFLGDGC
LMEGISHEVCSLAGTLQLGKLIAYYDDNGISIDGEVEGWFSDDTEERFKSYGWQVLRVDGHDADAIRQATVEAKAETQKP
TIIICKTIIGLGSPNKQGKEDCHGAPLGKDEITLTREALGWTEEAFVIPADVYAAWDAKAKGNEAEAAWNEVFAQYQAKY
PTEAAELLRRISGDLPAEFSAQADAFIRETNAKAETVATRKASQNTLQAFGPLLPELLGGSADLAGSNLTLWKGCQGVQE
NPAGNYVYYGVREFGMTAIANGVALHGGFIPYVATFLMFMEYARNAVRMSALMKQRVIHVYTHDSIGLGEDGPTHQPIEQ
IASLRGTPNLNTWRPADTVETAIAWKSALERKDGPTALIFSRQNLPFQTRTEEQIQNAAKGGYVLAQEKGELKAIIIATG
SEVSLAMEAYAQLEGVRVVSMPCAEEFMKQDAAYREAVLPAHIRARVAVEAAHVDYWWKFVGLDGKVIGMTTYGESAPAK
DLFQFFGITTEAVVAAVKELTA

Nucleotide


Download         Length: 1989 bp        

>NTDB_id=547648 LRX86_RS10400 WP_000211077.1 2183982..2185970(-) (recP/tkt) [Acinetobacter baumannii strain DETAB-R21]
ATGACGACCCCTTTAAACGAACGTCGTATTGCAAACGCAATTCGTGTATTGGCAATGGATGCTGTGCAACAGGCAAACTC
AGGGCATCCGGGTGCTCCAATGGGGATGGCAGATATTGCTGATGTCGTCTGGCGCGAGTTTTTAAATCACAACCCAAATA
ATCCACAATGGGCAAACCGTGACCGTTTTGTTTTATCAAATGGCCATGGTTCAATGTTGCAATATGCTTTGCTTCATTTA
ACAGGTTATGATCTTTCAATTGAAGATTTAAAACAATTCCGTCAATTGCACTCAAAAACTCCTGGTCACCCTGAATATGG
TTATGCTCCAGGAATTGAAACAACGACAGGTCCTTTGGGTCAAGGTATTGCGAACGGCGTTGGTTTTGCATTAGCAGAAA
AAACTTTAGCTGCTCAGTTCAATAAAGATGACTTAAAAGTAGTTGATCACTTCACCTATTGTTTCTTAGGTGATGGCTGT
TTAATGGAAGGTATTTCTCATGAAGTATGTTCTTTAGCAGGTACTTTACAGCTTGGTAAATTGATTGCTTATTATGATGA
CAACGGCATTTCGATTGATGGTGAAGTAGAAGGCTGGTTCAGTGATGACACTGAAGAGCGTTTCAAGTCTTATGGTTGGC
AAGTTCTTCGTGTAGATGGCCACGATGCTGATGCGATTCGTCAAGCAACAGTTGAAGCTAAAGCAGAAACTCAAAAACCA
ACGATTATTATTTGTAAAACAATTATTGGCTTAGGTTCTCCAAACAAGCAAGGTAAAGAAGACTGTCACGGTGCACCGCT
GGGTAAAGATGAAATTACCTTAACTCGTGAAGCTTTAGGCTGGACTGAAGAGGCGTTTGTTATTCCTGCTGATGTATATG
CTGCATGGGATGCTAAAGCAAAAGGTAATGAAGCTGAAGCAGCTTGGAATGAAGTATTTGCTCAATACCAAGCAAAATAT
CCAACGGAAGCGGCTGAGTTACTTCGTCGTATTAGCGGTGACTTACCAGCAGAATTTTCAGCTCAAGCAGATGCATTTAT
TCGTGAAACAAATGCTAAAGCTGAGACTGTAGCAACTCGTAAAGCGAGCCAAAACACATTACAAGCATTTGGTCCTTTAT
TACCTGAATTATTAGGTGGTTCTGCGGACTTGGCAGGTTCTAACTTAACACTTTGGAAAGGTTGCCAAGGTGTTCAAGAA
AACCCGGCTGGTAACTACGTATATTATGGTGTACGTGAGTTCGGTATGACTGCAATCGCTAACGGTGTTGCATTGCATGG
CGGCTTCATTCCTTACGTTGCAACGTTCTTAATGTTTATGGAATATGCACGTAATGCGGTACGTATGTCTGCATTAATGA
AACAGCGCGTGATTCATGTGTATACACATGACTCAATCGGTTTAGGTGAAGATGGTCCAACACACCAACCAATTGAACAA
ATTGCTTCTTTACGTGGCACACCAAACTTAAATACTTGGCGTCCTGCTGATACTGTAGAAACAGCAATTGCGTGGAAATC
TGCTTTAGAGCGTAAAGATGGCCCTACAGCACTTATTTTCTCTCGTCAAAACTTACCATTCCAAACGCGTACTGAAGAGC
AAATCCAAAATGCGGCAAAAGGTGGTTATGTTCTTGCTCAAGAGAAAGGTGAGTTGAAAGCAATTATTATTGCTACTGGT
TCAGAAGTTTCTTTAGCAATGGAAGCTTATGCTCAACTTGAAGGTGTTCGTGTTGTTTCTATGCCATGTGCAGAAGAGTT
CATGAAACAAGATGCTGCATATCGTGAAGCAGTATTACCAGCTCACATTCGTGCACGTGTTGCTGTAGAAGCTGCTCATG
TTGACTACTGGTGGAAGTTTGTTGGTCTTGATGGCAAAGTAATTGGTATGACAACTTATGGTGAGTCAGCACCAGCAAAA
GACTTGTTCCAATTCTTCGGTATTACAACTGAGGCTGTAGTTGCTGCGGTAAAAGAGTTAACTGCTTAA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(7-336)

Transketolase, C-terminal domain (Transketolase_C)

(551-653)

Transketolase, pyrimidine binding domain (Transket_pyr)

(356-526)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

47.344

99.547

0.471