Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   J4G45_RS13425 Genome accession   NZ_CP071770
Coordinates   2582617..2583774 (+) Length   385 a.a.
NCBI ID   WP_004970116.1    Uniprot ID   A0A2A5PDZ9
Organism   Acinetobacter towneri strain GX5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2577617..2588774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4G45_RS13410 (J4G45_13415) - 2579279..2581351 (-) 2073 WP_207973853.1 TonB-dependent copper receptor -
  J4G45_RS13415 (J4G45_13420) - 2581415..2581849 (-) 435 WP_026438527.1 DUF2946 family protein -
  J4G45_RS13420 (J4G45_13425) def 2581965..2582495 (-) 531 WP_004970115.1 peptide deformylase -
  J4G45_RS13425 (J4G45_13430) tsaP 2582617..2583774 (+) 1158 WP_004970116.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  J4G45_RS13430 (J4G45_13435) dprA 2583792..2585015 (+) 1224 WP_004970117.1 DNA-processing protein DprA Machinery gene
  J4G45_RS13435 (J4G45_13440) - 2585064..2585633 (+) 570 WP_207973852.1 L-threonylcarbamoyladenylate synthase -
  J4G45_RS13440 (J4G45_13445) - 2585668..2586726 (-) 1059 WP_207973851.1 RNA-guided endonuclease InsQ/TnpB family protein -
  J4G45_RS13445 (J4G45_13450) - 2586863..2587156 (+) 294 WP_004970123.1 hypothetical protein -
  J4G45_RS13450 (J4G45_13455) - 2587241..2588149 (-) 909 WP_096902732.1 DMT family transporter -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 42132.36 Da        Isoelectric Point: 9.0905

>NTDB_id=547647 J4G45_RS13425 WP_004970116.1 2582617..2583774(+) (tsaP) [Acinetobacter towneri strain GX5]
MKKVLTDTSSFRVLGFKKQVLALAVCLIVGLGAISVAEAAPARNINPPALKASAPNVYVVKKGDTLWDISKKFLNNPLRW
PEIWASNRHVKNPHWIFPGDRLLMCTYEGRPIIGKDEGDGCEGIIRRYAGKSTNLQPQIRVESLNNTIPVIPLDYIKHWL
ERSSIIAADALQGTPYILGTSDQRVLAAKGQSVYARGAGLEVGQRYGVYREGEPYMLTDANGQKFNAGIELTQVAAGIAV
RGENDITTLELTDTYNAEVRRGDRVLPIYDPMLPTLFYPTHAENVSTGGQVLRVMGSIGTAAKHSVVAIDRGTLHGVQSG
HVFSVAQKGEVVTDPKTKERVQLPGERIGNIMVFKSFDHISYAYVLDSELPIKVGASLQAPRMDD

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=547647 J4G45_RS13425 WP_004970116.1 2582617..2583774(+) (tsaP) [Acinetobacter towneri strain GX5]
ATGAAAAAGGTTTTGACAGACACATCCTCTTTTCGTGTCTTGGGGTTTAAAAAGCAAGTTTTAGCACTCGCGGTATGTCT
CATAGTGGGACTTGGTGCGATCAGTGTGGCTGAAGCAGCACCTGCACGAAACATCAATCCGCCTGCCTTAAAAGCCAGCG
CACCAAATGTGTATGTGGTAAAAAAAGGCGATACCTTATGGGATATTTCCAAAAAATTCCTGAACAACCCATTACGTTGG
CCTGAAATTTGGGCAAGTAACCGTCACGTAAAAAATCCACACTGGATTTTCCCAGGTGACCGTTTGTTGATGTGTACCTA
CGAAGGTCGCCCTATTATTGGTAAAGATGAAGGCGATGGCTGTGAAGGCATTATTCGTCGTTATGCAGGCAAGAGCACCA
ATTTACAGCCGCAAATTCGCGTGGAGTCTTTAAATAATACCATTCCTGTGATTCCACTTGACTACATCAAACACTGGTTA
GAGCGCAGCAGCATTATTGCCGCAGATGCGTTACAAGGCACACCATATATTTTAGGTACTTCTGATCAACGTGTTTTAGC
TGCTAAAGGTCAAAGTGTGTATGCACGTGGTGCAGGTCTGGAAGTAGGTCAACGCTACGGTGTATATCGTGAAGGCGAAC
CGTACATGCTGACCGATGCCAATGGTCAAAAATTCAATGCAGGCATTGAACTCACTCAAGTTGCTGCAGGTATTGCAGTA
CGTGGTGAAAATGACATCACCACACTTGAATTGACCGATACCTACAATGCCGAAGTGCGTCGTGGTGATCGCGTCTTACC
AATTTATGACCCAATGCTGCCAACCTTGTTCTACCCAACGCATGCTGAAAATGTCAGCACAGGTGGTCAGGTGCTACGTG
TGATGGGTTCGATTGGTACTGCAGCAAAACACAGTGTTGTGGCAATTGATCGCGGTACATTACATGGCGTGCAATCTGGT
CATGTGTTTAGCGTAGCGCAAAAAGGCGAAGTGGTCACCGACCCGAAAACCAAAGAACGTGTTCAGCTTCCAGGCGAACG
TATTGGCAATATCATGGTCTTCAAGAGCTTTGACCACATTAGCTATGCCTATGTTTTAGACAGTGAATTACCAATTAAAG
TCGGTGCGAGCTTACAAGCACCACGAATGGACGACTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A5PDZ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

64.935

100

0.649