Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LRX86_RS10230 Genome accession   NZ_CP088895
Coordinates   2149215..2149850 (-) Length   211 a.a.
NCBI ID   WP_000264035.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DETAB-R21     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2144215..2154850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRX86_RS10205 (LRX86_10200) - 2144271..2145251 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  LRX86_RS10210 (LRX86_10205) kdsB 2145263..2146024 (-) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LRX86_RS10215 (LRX86_10210) lpxK 2146034..2147044 (-) 1011 WP_000050447.1 tetraacyldisaccharide 4'-kinase -
  LRX86_RS10220 (LRX86_10215) msbA 2147047..2148774 (-) 1728 WP_001070725.1 lipid A export permease/ATP-binding protein MsbA -
  LRX86_RS10225 (LRX86_10220) - 2148771..2149199 (-) 429 WP_000669686.1 biopolymer transporter ExbD -
  LRX86_RS10230 (LRX86_10225) exbB 2149215..2149850 (-) 636 WP_000264035.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LRX86_RS10235 (LRX86_10230) - 2149900..2150787 (-) 888 WP_000023427.1 ParB/RepB/Spo0J family partition protein -
  LRX86_RS10240 (LRX86_10235) - 2150784..2151566 (-) 783 WP_000057212.1 ParA family protein -
  LRX86_RS10245 (LRX86_10240) rsmG 2151588..2152220 (-) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  LRX86_RS10250 (LRX86_10245) murU 2152308..2152997 (-) 690 WP_000646451.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  LRX86_RS10255 (LRX86_10250) - 2152997..2154010 (-) 1014 WP_001096102.1 phosphotransferase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23211.10 Da        Isoelectric Point: 6.4861

>NTDB_id=547647 LRX86_RS10230 WP_000264035.1 2149215..2149850(-) (exbB) [Acinetobacter baumannii strain DETAB-R21]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDNNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=547647 LRX86_RS10230 WP_000264035.1 2149215..2149850(-) (exbB) [Acinetobacter baumannii strain DETAB-R21]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAACAGGATAATAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCTCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCGCCGCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCGACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393