Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   J4G45_RS13020 Genome accession   NZ_CP071770
Coordinates   2493986..2494312 (-) Length   108 a.a.
NCBI ID   WP_004975751.1    Uniprot ID   A0A2A5PGU4
Organism   Acinetobacter towneri strain GX5     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2488986..2499312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4G45_RS13000 (J4G45_13005) - 2489208..2489858 (-) 651 WP_207973864.1 FHA domain-containing protein -
  J4G45_RS13005 (J4G45_13010) gspD 2489928..2492183 (-) 2256 WP_179994905.1 type II secretion system secretin GspD -
  J4G45_RS13010 (J4G45_13015) - 2492244..2493083 (-) 840 WP_004975757.1 type II secretion system protein N -
  J4G45_RS13015 (J4G45_13020) gspN 2493083..2493823 (-) 741 WP_096901906.1 type II secretion system protein N -
  J4G45_RS13020 (J4G45_13025) hns 2493986..2494312 (-) 327 WP_004975751.1 H-NS family nucleoid-associated regulatory protein Regulator
  J4G45_RS13025 (J4G45_13030) - 2494458..2494889 (-) 432 WP_004975749.1 acyl-CoA thioesterase -
  J4G45_RS13030 (J4G45_13035) - 2494899..2496092 (-) 1194 WP_207973863.1 heme biosynthesis protein HemY -
  J4G45_RS13035 (J4G45_13040) - 2496093..2496929 (-) 837 WP_207973862.1 hypothetical protein -
  J4G45_RS13040 (J4G45_13045) - 2496926..2497705 (-) 780 WP_004975746.1 uroporphyrinogen-III synthase -
  J4G45_RS13045 (J4G45_13050) hemC 2497727..2498647 (-) 921 WP_096901970.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12180.06 Da        Isoelectric Point: 9.8659

>NTDB_id=547642 J4G45_RS13020 WP_004975751.1 2493986..2494312(-) (hns) [Acinetobacter towneri strain GX5]
MMPDISNLSVEQLKRLQAEAEALIATKKDQAIEDAYNQILAIADNLGLSIEQILEVGESKRKKSPRKTVAPRYRSKINST
DTWTGRGKKPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=547642 J4G45_RS13020 WP_004975751.1 2493986..2494312(-) (hns) [Acinetobacter towneri strain GX5]
ATGATGCCTGATATTAGCAATTTGTCTGTAGAACAGTTAAAGCGTTTACAAGCTGAAGCGGAAGCATTAATTGCCACGAA
AAAAGATCAAGCGATTGAAGATGCCTATAATCAAATTTTAGCGATTGCAGACAATTTGGGTTTAAGCATTGAGCAGATTT
TGGAAGTTGGCGAAAGCAAGCGTAAGAAAAGCCCACGTAAAACTGTAGCGCCACGTTATCGTAGCAAAATCAATTCTACA
GATACTTGGACTGGTCGTGGTAAAAAACCACGCTGGTTAGTCGCTGAATTAGAAAAAGGCGCAAAACTTGAAGATTTTCT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A5PGU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

75.926

100

0.759