Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   J4G45_RS11985 Genome accession   NZ_CP071770
Coordinates   2270099..2270956 (-) Length   285 a.a.
NCBI ID   WP_171062604.1    Uniprot ID   -
Organism   Acinetobacter towneri strain GX5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2265099..2275956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4G45_RS11970 (J4G45_11975) miaB 2266793..2268247 (+) 1455 WP_207973895.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  J4G45_RS11975 (J4G45_11980) - 2268287..2269360 (+) 1074 WP_004976193.1 PhoH family protein -
  J4G45_RS11980 (J4G45_11985) ybeY 2269404..2269886 (+) 483 WP_004976192.1 rRNA maturation RNase YbeY -
  J4G45_RS11985 (J4G45_11990) tonB2 2270099..2270956 (-) 858 WP_171062604.1 energy transducer TonB Machinery gene
  J4G45_RS11990 (J4G45_11995) - 2271232..2271906 (+) 675 WP_004976182.1 hypothetical protein -
  J4G45_RS11995 (J4G45_12000) - 2272052..2272765 (+) 714 WP_004976176.1 DUF3108 domain-containing protein -
  J4G45_RS12000 (J4G45_12005) - 2272894..2273469 (+) 576 WP_004976172.1 xanthine phosphoribosyltransferase -
  J4G45_RS12005 (J4G45_12010) - 2273732..2274133 (+) 402 WP_179989430.1 hypothetical protein -
  J4G45_RS12010 (J4G45_12015) - 2274192..2274383 (-) 192 WP_179989432.1 hypothetical protein -
  J4G45_RS12015 (J4G45_12020) wrbA 2274952..2275548 (-) 597 WP_167846439.1 NAD(P)H:quinone oxidoreductase -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 32209.53 Da        Isoelectric Point: 6.2940

>NTDB_id=547638 J4G45_RS11985 WP_171062604.1 2270099..2270956(-) (tonB2) [Acinetobacter towneri strain GX5]
MPSTQDWWKDPIFAAALLVAAVLHALILAVQFAAPQQSDAAVKEIAVSVRMSDAKVEDADFLAQADQQGSGTFREEHRMS
SDMPAPMTEQSAGEQQLESLERMQQQRELNFEEKVLMTTLSWQKQAAENQRKKAMQELNSQFQAKAAMVASIEAQYLQRQ
QNFSRQQKIKTIDGIQAKQDNTAGYMEKFRQKVEFYGNRYYPEQAKAQNLAGEVRLMVILNNNGGIRAIRLIESSGHAML
DEAAKASVRKAAPFGAFDAKMKDISELRIVRTWRFDPAEAEFEVR

Nucleotide


Download         Length: 858 bp        

>NTDB_id=547638 J4G45_RS11985 WP_171062604.1 2270099..2270956(-) (tonB2) [Acinetobacter towneri strain GX5]
ATGCCTTCTACGCAAGATTGGTGGAAAGATCCTATTTTTGCTGCAGCGTTGCTGGTGGCTGCTGTATTGCACGCATTAAT
TTTGGCCGTGCAGTTTGCTGCACCGCAACAAAGCGATGCTGCGGTCAAAGAGATTGCGGTATCGGTACGCATGAGCGATG
CAAAAGTTGAAGATGCAGATTTCTTAGCCCAAGCCGATCAGCAAGGTTCAGGTACGTTCCGTGAAGAACATCGCATGTCG
AGTGATATGCCTGCACCCATGACTGAACAAAGTGCAGGGGAGCAGCAATTGGAAAGTTTAGAGCGTATGCAGCAACAGCG
TGAATTAAACTTTGAAGAAAAAGTATTGATGACCACGCTCAGTTGGCAAAAACAGGCTGCAGAAAATCAGCGCAAAAAAG
CCATGCAGGAGTTGAATAGCCAATTCCAAGCTAAGGCTGCCATGGTCGCTAGTATTGAAGCGCAATATTTACAACGCCAA
CAAAATTTTAGCCGTCAGCAAAAAATTAAAACCATCGATGGGATTCAGGCCAAGCAAGACAACACCGCTGGTTATATGGA
AAAATTCCGTCAAAAAGTCGAATTTTATGGTAACCGTTATTATCCAGAACAAGCCAAAGCACAGAATTTGGCAGGCGAAG
TACGTTTAATGGTGATTTTGAACAACAATGGTGGGATTCGTGCCATTCGTTTAATTGAAAGTTCAGGACATGCCATGCTA
GATGAAGCAGCCAAAGCTTCGGTGCGTAAAGCCGCACCTTTTGGTGCATTTGATGCCAAAATGAAAGATATTTCTGAATT
GCGGATTGTACGGACGTGGCGTTTTGACCCTGCTGAAGCTGAGTTTGAGGTGCGCTAG

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(198-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

72.043

97.895

0.705