Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   J4G45_RS03890 Genome accession   NZ_CP071770
Coordinates   633592..634380 (+) Length   262 a.a.
NCBI ID   WP_371971077.1    Uniprot ID   -
Organism   Acinetobacter towneri strain GX5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 628592..639380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4G45_RS03860 (J4G45_03860) - 628700..629125 (+) 426 WP_004975083.1 hypothetical protein -
  J4G45_RS03865 (J4G45_03865) - 629392..630675 (+) 1284 WP_207973723.1 glycosyltransferase family 4 protein -
  J4G45_RS03870 (J4G45_03870) - 630701..631252 (+) 552 WP_004975087.1 phosphatase PAP2 family protein -
  J4G45_RS03875 (J4G45_03875) iscX 631354..631554 (+) 201 WP_019836293.1 Fe-S cluster assembly protein IscX -
  J4G45_RS03880 (J4G45_03880) ndk 631716..632147 (+) 432 WP_004975092.1 nucleoside-diphosphate kinase -
  J4G45_RS03885 (J4G45_03885) rlmN 632284..633516 (+) 1233 WP_004975094.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  J4G45_RS03890 (J4G45_03890) pilF 633592..634380 (+) 789 WP_371971077.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  J4G45_RS03895 (J4G45_03895) - 634371..635180 (+) 810 WP_207973722.1 helix-turn-helix domain-containing protein -
  J4G45_RS03900 (J4G45_03900) ispG 635203..636324 (+) 1122 WP_207973721.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  J4G45_RS03905 (J4G45_03905) hisS 636328..637623 (+) 1296 WP_207973720.1 histidine--tRNA ligase -
  J4G45_RS03910 (J4G45_03910) - 637654..638355 (+) 702 WP_096901519.1 YfgM family protein -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29451.33 Da        Isoelectric Point: 8.7703

>NTDB_id=547624 J4G45_RS03890 WP_371971077.1 633592..634380(+) (pilF) [Acinetobacter towneri strain GX5]
MAQITTVCISAIFAAACQTTAPTLGQKDPEKAVQVRTQLAAEYLKNGDLDSAKRALDQALESDSRDSTANMMMGVLLQQE
GSKLNLEKADAYFKRAIAADPKNAQARNNYGTYLYQVERYNDAIEQLSIAGATLGYDQRFRALENVGRIYLKLGDIENAE
KSFKQALQANRDSYVSMLELSEILYLRQQFAPARQLYEQFVRAVGQKNQGARALWIGIRLARANGDQLGTQVLVNQLRAL
FPNSQEYQRYLQLQYSTEAVWK

Nucleotide


Download         Length: 789 bp        

>NTDB_id=547624 J4G45_RS03890 WP_371971077.1 633592..634380(+) (pilF) [Acinetobacter towneri strain GX5]
ATCGCACAAATTACAACTGTTTGTATTTCGGCAATTTTTGCTGCAGCTTGTCAAACCACAGCTCCAACCTTAGGGCAAAA
AGACCCTGAAAAAGCGGTGCAAGTACGTACGCAGTTGGCAGCAGAATACTTAAAAAATGGCGATTTAGACTCAGCCAAAC
GCGCACTTGATCAAGCTTTGGAAAGCGATTCACGTGATTCCACCGCCAATATGATGATGGGCGTGTTGCTGCAACAAGAA
GGCAGCAAGCTGAATTTAGAAAAAGCCGATGCGTATTTTAAGCGTGCCATTGCCGCTGACCCAAAAAATGCACAAGCGCG
TAACAACTATGGTACGTATTTATATCAAGTAGAACGCTATAATGATGCGATTGAGCAGCTCAGTATTGCAGGTGCAACAC
TGGGTTATGATCAACGCTTTAGAGCATTGGAAAATGTAGGTCGTATTTACTTGAAATTAGGCGATATAGAGAATGCCGAA
AAGTCATTCAAACAAGCCTTGCAAGCCAATCGCGATTCTTATGTTTCAATGTTAGAGTTGTCGGAAATTTTATATTTAAG
ACAACAATTTGCACCCGCGCGACAATTGTATGAACAATTTGTACGTGCTGTGGGGCAAAAAAATCAGGGTGCGCGTGCCT
TATGGATTGGGATTCGTTTAGCACGTGCCAATGGCGATCAATTGGGAACTCAGGTTTTAGTGAACCAGCTGCGTGCATTA
TTTCCCAATAGCCAAGAATACCAACGTTATTTGCAATTACAGTACAGTACTGAGGCCGTATGGAAGTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_17)

(93-125)

Tetratricopeptide repeat (TPR_16)

(39-76)

Tetratricopeptide repeat (TPR_16)

(147-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Acinetobacter baumannii D1279779

77.778

96.183

0.748
  pilF Acinetobacter baylyi ADP1

72.047

96.947

0.698