Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   LRX86_RS03570 Genome accession   NZ_CP088895
Coordinates   736928..737290 (+) Length   120 a.a.
NCBI ID   WP_000101096.1    Uniprot ID   A0ABN3ANQ3
Organism   Acinetobacter baumannii strain DETAB-R21     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 731928..742290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRX86_RS03545 (LRX86_03545) - 732444..733534 (+) 1091 WP_085947913.1 IS4-like element ISAba1 family transposase -
  LRX86_RS03550 (LRX86_03550) - 733555..734406 (-) 852 Protein_680 efflux RND transporter permease subunit -
  LRX86_RS03555 (LRX86_03555) - 734422..735540 (-) 1119 WP_001260821.1 efflux RND transporter periplasmic adaptor subunit -
  LRX86_RS03560 (LRX86_03560) - 735600..736238 (-) 639 WP_031949092.1 hypothetical protein -
  LRX86_RS03565 (LRX86_03565) pilG 736521..736904 (+) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  LRX86_RS03570 (LRX86_03570) pilH 736928..737290 (+) 363 WP_000101096.1 PleD family two-component system response regulator Machinery gene
  LRX86_RS03575 (LRX86_03575) - 737351..737887 (+) 537 WP_254231405.1 chemotaxis protein CheW -
  LRX86_RS03580 (LRX86_03580) - 737934..740012 (+) 2079 WP_000505931.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13479.47 Da        Isoelectric Point: 4.9102

>NTDB_id=547624 LRX86_RS03570 WP_000101096.1 736928..737290(+) (pilH) [Acinetobacter baumannii strain DETAB-R21]
MARILIVDDSPTETFRFKEILTKHGYDVLEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVI
VSTKDQATDRVWGKRQGAIDYLIKPIEEKQLIDVIKQFLN

Nucleotide


Download         Length: 363 bp        

>NTDB_id=547624 LRX86_RS03570 WP_000101096.1 736928..737290(+) (pilH) [Acinetobacter baumannii strain DETAB-R21]
ATGGCACGTATTCTCATTGTTGATGACTCACCAACAGAAACTTTTCGTTTTAAAGAAATCCTAACTAAGCATGGCTATGA
CGTACTTGAAGCATCTAACGGTGCAGATGGTGTGACTTTGGCAAAAGCTGAGCAGCCTGACTTGGTATTAATGGATGTGG
TCATGCCAGGTGTAAATGGTTTTCAGGCAACGCGCCAGATTACCCGTGATGAAGACACGAAGCATATTCCGGTGGTGATT
GTGAGTACTAAAGATCAGGCAACTGACCGAGTATGGGGTAAACGTCAAGGCGCAATCGATTACTTAATCAAGCCAATCGA
AGAAAAGCAATTAATTGATGTAATTAAACAATTTCTAAATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

39.496

99.167

0.392