Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   LRX86_RS03395 Genome accession   NZ_CP088895
Coordinates   702840..703355 (-) Length   171 a.a.
NCBI ID   WP_000477151.1    Uniprot ID   V5VA61
Organism   Acinetobacter baumannii strain DETAB-R21     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 697840..708355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRX86_RS03370 (LRX86_03370) - 698386..700029 (+) 1644 WP_000281766.1 nitrite/sulfite reductase -
  LRX86_RS03375 (LRX86_03375) - 700022..700507 (+) 486 WP_000935246.1 DUF934 domain-containing protein -
  LRX86_RS03380 (LRX86_03380) - 700590..700943 (+) 354 WP_000457783.1 multidrug efflux SMR transporter -
  LRX86_RS03385 (LRX86_03385) - 700986..701429 (-) 444 WP_001176580.1 VOC family protein -
  LRX86_RS03390 (LRX86_03390) - 701556..702731 (-) 1176 WP_000129968.1 thiolase family protein -
  LRX86_RS03395 (LRX86_03395) fimT 702840..703355 (-) 516 WP_000477151.1 GspH/FimT family pseudopilin Machinery gene
  LRX86_RS03400 (LRX86_03400) omp38 703737..704780 (+) 1044 WP_000777884.1 outer membrane protein Omp38 -
  LRX86_RS03405 (LRX86_03405) - 704905..705048 (-) 144 WP_162541494.1 hypothetical protein -
  LRX86_RS03410 (LRX86_03410) - 705067..706272 (-) 1206 WP_000512701.1 RtcB family protein -
  LRX86_RS03415 (LRX86_03415) - 706548..708008 (-) 1461 WP_000004974.1 amino acid permease -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19606.86 Da        Isoelectric Point: 8.8196

>NTDB_id=547622 LRX86_RS03395 WP_000477151.1 702840..703355(-) (fimT) [Acinetobacter baumannii strain DETAB-R21]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=547622 LRX86_RS03395 WP_000477151.1 702840..703355(-) (fimT) [Acinetobacter baumannii strain DETAB-R21]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(50-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V5VA61

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.976

97.076

0.427