Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL-C   Type   Machinery gene
Locus tag   PLE7327_RS08705 Genome accession   NC_019689
Coordinates   1947725..1951165 (-) Length   1146 a.a.
NCBI ID   WP_015143476.1    Uniprot ID   K9T2Q4
Organism   Pleurocapsa sp. PCC 7327     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1942725..1956165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PLE7327_RS26460 (Ple7327_1817) - 1943013..1943295 (-) 283 Protein_1762 DUF3124 domain-containing protein -
  PLE7327_RS08685 (Ple7327_1818) gltX 1943332..1944777 (-) 1446 WP_015143472.1 glutamate--tRNA ligase -
  PLE7327_RS08690 (Ple7327_1819) - 1944897..1945178 (-) 282 WP_015143473.1 acylphosphatase -
  PLE7327_RS08695 (Ple7327_1820) - 1945182..1946075 (-) 894 WP_015143474.1 CoB--CoM heterodisulfide reductase iron-sulfur subunit B family protein -
  PLE7327_RS08700 (Ple7327_1821) - 1946460..1947512 (-) 1053 WP_015143475.1 adenosine deaminase -
  PLE7327_RS08705 (Ple7327_1822) pilL-C 1947725..1951165 (-) 3441 WP_015143476.1 hybrid sensor histidine kinase/response regulator Machinery gene
  PLE7327_RS08710 (Ple7327_1823) - 1951200..1951460 (-) 261 WP_015143477.1 hypothetical protein -
  PLE7327_RS08715 - 1951622..1952583 (-) 962 Protein_1769 RNA-guided endonuclease InsQ/TnpB family protein -
  PLE7327_RS23275 (Ple7327_1825) - 1952646..1953487 (+) 842 Protein_1770 IS5 family transposase -
  PLE7327_RS08725 (Ple7327_1826) era 1953687..1954637 (-) 951 WP_015143479.1 GTPase Era -
  PLE7327_RS08730 (Ple7327_1827) - 1954634..1955773 (-) 1140 WP_015143480.1 succinylglutamate desuccinylase/aspartoacylase family protein -
  PLE7327_RS26140 - 1955905..1956027 (+) 123 WP_256377722.1 hypothetical protein -

Sequence

Protein


Download         Length: 1146 a.a.        Molecular weight: 126260.72 Da        Isoelectric Point: 4.3226

>NTDB_id=54762 PLE7327_RS08705 WP_015143476.1 1947725..1951165(-) (pilL-C) [Pleurocapsa sp. PCC 7327]
MSRDPKQNDRADNFLGDREIAELLDNLEDSPTSASANGSLDDFGSLFNEDFSTDSTDSGMLSDNLPDRITFSELPSDDEI
SKIFSEDLSWKEDRSSSPERDRWLDFSAPETQSQENVTTSASDFLNDELATFLSEESFDGNSVQPIAAESPSLDDELATF
LSEESFDGNVADDTNTTPQSSDWDELKQLLAGDDLEETYSPTAGDSPAIPAPTPVTEEESLALGESDLDDLAALLEEPTT
ASASRTLEPNIFEDLEAVLGDFPATMNDPSPSNKNNRSDDEFQDLEKLLEKAEGTISPSPAAQPASIAPRLQARTRVPKA
KLFDQTMRVPVKQLDNLSNLIGELVVKRNALEDDQERLRQSLDNLLNQVQALSEMGARMHDLYERTLLEGALLASRNQNN
SFAGSGSNAFPTSNADASSGNASYPIDRELDALEIDRFTGFHLLSQEMIELIVRIRESTSDIQFLVDDTDQVTRTLRQVT
TQLQEGMTKSRMVPFAQTADRLPRAIREVSMRLNKQAKLYVEGKDVLIDKMILEQLYNPMTHLVNNAIAHGIETPEERIK
NGKPPEGRVTVRAFIQGNQTVITVSDDGAGINPERVKFKAIEKGLITQAQARTLSKQEVYDFLFHPGFSTKDKADDFAGR
GVGLDVVYTNLSEIRGTVSIDSAIGKGTTFTIRLPLTLSICKALCCESERSRIAFPIDGVEDTKDYSPSELFTDEEGRKC
IRWREMELPIYRLSELLNYNRQASRRASYANKPPEELLSIVVLRSAGNLLALQIDRAIGEQEIVIKQIEGPIPKPAGIAG
ATVLGDGSVMPIGDVLELIEIAQGRMRTDSSGSLWKKTYVPIQEEGVRSEPTVLIVDDSITVRQLLSLSFSKAGYRVEQA
RDGQEALEKLQSGLPCDIVFCDIEMPRMNGLELLSHLQQDARLSEIPLALLTSRGAQRHRTVAAKLGASGYFTKPYTEKD
LLDAAARMLKGEVLLPGSTKTPRASNPAADNFSEAEVSFPGLSTIEPRSAKSENLVLIVDDSVMVREMLSMTFNKAGYRV
EPARDGQEAWEKLRGGLPCDLILCDIEMPRMNGLELLSRLQEDEKLSAIPMAMITSRGAQKMQNLAAEKGAKGYFVKPYI
EEVLLDAAKRLIAGEVLLKKGSAVEE

Nucleotide


Download         Length: 3441 bp        

>NTDB_id=54762 PLE7327_RS08705 WP_015143476.1 1947725..1951165(-) (pilL-C) [Pleurocapsa sp. PCC 7327]
ATGAGCCGCGACCCAAAACAAAACGATCGAGCCGACAACTTCCTAGGCGATCGAGAAATTGCCGAACTTCTCGACAACTT
AGAAGATAGCCCGACTTCAGCATCTGCCAACGGCAGCTTGGATGACTTCGGGAGTTTGTTTAATGAAGATTTCTCGACAG
ACTCAACCGATTCTGGCATGCTATCGGACAACCTCCCAGACCGAATCACTTTCTCAGAGCTGCCATCGGACGATGAAATC
AGCAAGATCTTTAGCGAAGACTTGTCCTGGAAAGAAGATCGCTCGTCTTCGCCAGAGCGCGATCGATGGCTTGACTTCTC
CGCTCCAGAAACCCAGAGTCAAGAAAATGTAACAACTTCTGCATCGGATTTTCTAAACGACGAGCTAGCCACCTTCCTTT
CCGAAGAATCTTTCGATGGAAATTCTGTCCAACCCATCGCCGCTGAGTCGCCTTCCTTAGACGACGAGCTAGCTACTTTC
CTTTCTGAGGAATCTTTCGATGGCAATGTCGCCGATGATACCAATACAACTCCGCAATCGAGCGATTGGGACGAACTCAA
ACAGTTATTAGCTGGAGACGATCTCGAAGAAACTTACTCTCCGACCGCTGGGGATTCGCCTGCCATACCCGCACCAACGC
CAGTTACGGAGGAAGAATCGCTAGCGTTAGGCGAATCCGATCTTGATGACTTAGCAGCCCTGCTCGAAGAACCGACAACT
GCCTCTGCTAGCAGAACCCTAGAGCCAAATATTTTTGAGGATTTAGAAGCGGTGCTCGGCGATTTTCCAGCCACCATGAA
CGATCCTTCACCGAGCAACAAAAACAATAGGTCGGACGATGAATTCCAAGATTTAGAAAAACTGTTAGAAAAAGCAGAGG
GAACGATAAGCCCATCCCCTGCGGCTCAACCTGCTAGCATAGCCCCGCGCCTACAAGCCCGCACCCGCGTACCCAAGGCA
AAACTCTTCGATCAGACCATGCGGGTGCCCGTCAAGCAACTGGACAATCTCAGCAACCTCATCGGGGAATTGGTCGTCAA
ACGAAACGCCTTAGAAGACGACCAGGAACGCTTGCGGCAATCTTTGGATAATTTGCTCAATCAGGTGCAGGCGCTGAGCG
AGATGGGCGCGAGAATGCACGATCTTTACGAGCGAACTCTCCTAGAGGGCGCTCTGCTGGCCAGCCGCAATCAAAATAAC
TCCTTTGCCGGCTCTGGCTCTAATGCCTTTCCAACCTCTAACGCGGACGCGTCTAGCGGCAACGCGAGCTACCCAATCGA
TCGCGAGTTAGACGCTCTAGAGATAGATCGTTTCACGGGCTTCCACCTCCTCTCGCAGGAGATGATCGAGCTAATCGTCC
GCATCAGAGAATCCACTTCGGACATTCAGTTTCTCGTAGACGATACCGACCAAGTAACGCGAACGCTGCGGCAAGTCACG
ACCCAACTGCAAGAAGGAATGACCAAATCCAGAATGGTGCCCTTTGCTCAAACGGCAGATCGCTTGCCTCGTGCCATTCG
GGAAGTTTCCATGCGGCTTAATAAACAGGCGAAGTTATACGTCGAGGGCAAGGATGTCTTGATCGACAAGATGATCCTCG
AGCAACTGTATAACCCGATGACGCACCTGGTCAATAACGCGATCGCCCACGGGATCGAAACCCCTGAAGAACGGATCAAA
AATGGCAAACCCCCCGAAGGTCGCGTCACCGTTCGCGCCTTTATTCAAGGAAACCAAACCGTAATCACCGTCTCCGACGA
CGGCGCGGGCATCAATCCAGAAAGAGTCAAATTCAAAGCGATTGAAAAAGGTCTGATTACCCAGGCACAGGCGAGAACTT
TATCTAAGCAGGAAGTCTACGATTTCCTCTTTCACCCCGGCTTTAGTACCAAAGACAAAGCCGATGACTTTGCGGGCAGA
GGTGTCGGTCTAGACGTGGTTTACACCAACCTCAGCGAAATTCGCGGAACGGTCAGCATTGACTCTGCCATCGGCAAGGG
AACTACCTTTACCATTCGCTTGCCCTTGACGCTGAGTATTTGTAAAGCACTGTGTTGTGAGAGCGAGCGATCGCGAATTG
CCTTCCCCATCGATGGGGTAGAAGACACGAAAGATTACTCGCCCAGCGAGCTGTTTACTGATGAAGAAGGACGCAAATGC
ATTCGCTGGCGCGAGATGGAATTGCCGATCTATCGCCTGAGCGAGCTGCTCAATTACAATCGTCAAGCCAGTCGCCGAGC
TTCCTACGCCAACAAGCCACCAGAAGAGCTACTTTCGATTGTCGTGCTTCGCAGCGCAGGTAACTTGCTAGCCCTGCAAA
TCGATCGGGCGATTGGAGAGCAAGAAATCGTTATTAAACAAATCGAAGGTCCCATTCCCAAACCGGCTGGCATCGCCGGA
GCTACCGTATTGGGGGATGGAAGCGTTATGCCCATCGGCGACGTTCTCGAACTGATCGAAATCGCTCAAGGACGGATGCG
GACAGACAGCAGCGGCAGTCTGTGGAAGAAGACCTACGTCCCGATTCAAGAAGAAGGAGTCAGAAGCGAACCTACCGTAC
TCATCGTGGACGACTCGATTACTGTTCGCCAGTTATTATCGCTCAGCTTCAGTAAAGCCGGCTATCGAGTAGAGCAAGCC
CGCGACGGCCAGGAAGCTTTAGAAAAACTGCAATCCGGTTTGCCCTGCGATATTGTCTTCTGTGATATCGAAATGCCGAG
AATGAACGGGTTAGAGCTACTGTCTCACCTCCAGCAAGATGCGAGACTCTCAGAGATTCCTCTTGCCCTGCTCACCTCTC
GCGGCGCTCAGCGACATCGAACGGTGGCAGCTAAATTGGGGGCTAGCGGCTATTTTACCAAGCCTTACACTGAAAAAGAC
TTGCTCGATGCAGCAGCCAGAATGCTCAAAGGAGAAGTCTTGCTCCCTGGCAGTACCAAGACCCCCAGGGCGAGCAATCC
AGCAGCGGACAATTTCTCTGAGGCAGAAGTTTCTTTCCCTGGACTTTCGACCATAGAGCCTCGTTCTGCCAAATCTGAAA
ATTTGGTTCTGATTGTGGACGATTCGGTAATGGTGCGCGAGATGCTCTCAATGACCTTTAATAAAGCTGGATACCGAGTC
GAACCAGCCCGCGACGGTCAAGAAGCGTGGGAAAAACTTCGCGGGGGTTTGCCTTGCGACTTGATTTTGTGCGATATCGA
AATGCCGAGGATGAATGGCTTGGAACTGCTATCGCGCCTTCAGGAAGATGAAAAGCTCTCTGCTATCCCCATGGCGATGA
TCACGTCTCGTGGCGCCCAAAAAATGCAAAACTTAGCTGCCGAGAAGGGTGCTAAAGGATACTTTGTCAAGCCTTATATT
GAAGAAGTTTTGCTAGATGCAGCCAAGCGCTTGATTGCTGGGGAAGTCTTGCTCAAGAAAGGCAGTGCCGTGGAAGAATA
A

Domains

Predicted by InterproScan.

Signal transducing histidine kinase, homodimeric domain (H-kinase_dim)

(325-374)

Response regulator receiver domain (Response_reg)

(853-964)

Response regulator receiver domain (Response_reg)

(1016-1127)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(540-677)

CheW-like domain (CheW)

(683-820)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K9T2Q4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL-C Synechocystis sp. PCC 6803

64.683

87.958

0.569

Multiple sequence alignment