Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   PLE7327_RS05790 Genome accession   NC_019689
Coordinates   1293077..1294714 (+) Length   545 a.a.
NCBI ID   WP_041392858.1    Uniprot ID   -
Organism   Pleurocapsa sp. PCC 7327     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1288077..1299714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PLE7327_RS05775 (Ple7327_1213) - 1288445..1289782 (-) 1338 WP_015142922.1 TRAP transporter large permease subunit -
  PLE7327_RS05780 (Ple7327_1214) - 1289808..1290404 (-) 597 WP_015142923.1 TRAP transporter small permease subunit -
  PLE7327_RS05785 (Ple7327_1215) - 1290808..1292865 (-) 2058 WP_015142924.1 thioredoxin domain-containing protein -
  PLE7327_RS05790 (Ple7327_1216) comA 1293077..1294714 (+) 1638 WP_041392858.1 DUF655 domain-containing protein Machinery gene
  PLE7327_RS25655 (Ple7327_1217) - 1294788..1296344 (+) 1557 WP_015142926.1 rhomboid family intramembrane serine protease -
  PLE7327_RS05800 (Ple7327_1218) dcd 1296411..1296992 (+) 582 WP_015142927.1 dCTP deaminase -
  PLE7327_RS05805 (Ple7327_1219) - 1297048..1298571 (-) 1524 WP_015142928.1 thymidylate synthase -

Sequence

Protein


Download         Length: 545 a.a.        Molecular weight: 61204.38 Da        Isoelectric Point: 7.1073

>NTDB_id=54759 PLE7327_RS05790 WP_041392858.1 1293077..1294714(+) (comA) [Pleurocapsa sp. PCC 7327]
MKQSFFIKKYHISIFFVSLFFLISCQRNPESQRLQPLAQNPYIQAYFNHNQAKGANYTDPYRNITRPGDNLEQIIIDGIN
SANSSIDVAVQEFRLPKIAQALAERYQAGVKVRVILENIYNRPFSELTETEINQLTKRERDRYNEFLAFTDKNKDGKLSS
QEVNEGDALIIMRNASIPIIDDTADGSAGSGLMHHKFTIIDGNTVLVGSANYTISDIHGDFSYPETRGNANNLLKINNPQ
LAQIFTEEFNLMWGDGPGNRLDSKFGIKKSIRESKKIAIGDSRITVHFSPDSLMVPWNYTSNGLIGSTLRKATNSIELAL
FVFSEQKLADILETLHHQDVKIKALIEPEFAFRNYSESLDMLGVALSEKCQYEENNRPWRVPLATVGIPQMPQGDKLHHK
FGIVDRDIVITGSHNWSAAANYYNDETLLVVESSQVAAHFIREFEQLYSKAILGVPATLQQKIKAEANKCSSAKTIFSPS
NTNGLININIASPEELETLPGIGAKLAQRIVEARQQQPFTSLEDLKRVSGISSSKLKKIEGRVTW

Nucleotide


Download         Length: 1638 bp        

>NTDB_id=54759 PLE7327_RS05790 WP_041392858.1 1293077..1294714(+) (comA) [Pleurocapsa sp. PCC 7327]
ATGAAACAATCTTTTTTTATTAAAAAATATCATATTTCCATCTTTTTTGTAAGTTTATTTTTTCTAATTTCTTGTCAAAG
AAACCCAGAAAGCCAACGTCTTCAACCATTGGCTCAAAATCCTTACATTCAAGCTTACTTTAACCACAATCAAGCCAAAG
GAGCCAACTATACCGATCCCTATCGCAACATTACTCGCCCTGGAGATAATTTAGAACAAATTATTATTGATGGGATTAAC
TCAGCGAACTCTAGTATTGATGTTGCCGTGCAAGAATTTCGCTTGCCGAAAATCGCTCAAGCACTGGCAGAACGATATCA
AGCAGGAGTTAAAGTTAGAGTAATTTTAGAGAACATTTATAATCGTCCATTCAGCGAACTGACAGAAACAGAGATTAATC
AACTTACCAAAAGAGAGCGCGATCGCTATAATGAATTTTTGGCTTTTACCGATAAAAATAAAGACGGAAAACTCAGTTCT
CAGGAAGTTAATGAAGGCGATGCATTAATTATTATGCGCAATGCTAGTATTCCTATTATTGACGATACAGCAGATGGATC
CGCTGGTAGCGGTTTAATGCACCACAAATTTACTATTATTGACGGTAATACTGTATTAGTAGGCTCAGCTAACTATACTA
TTAGCGATATTCATGGAGATTTTAGCTATCCAGAAACTAGGGGAAATGCTAATAATTTGCTAAAAATTAATAATCCTCAA
TTGGCACAAATTTTTACTGAAGAATTTAACCTGATGTGGGGGGATGGTCCTGGAAATCGATTAGATAGTAAATTCGGCAT
CAAAAAATCCATTCGAGAGTCAAAAAAAATTGCGATCGGTGACAGCAGGATTACAGTACACTTTTCTCCTGATTCATTAA
TGGTTCCTTGGAACTATACCAGTAATGGGTTAATTGGTAGCACGCTGAGAAAAGCTACTAATTCAATCGAATTAGCTTTA
TTTGTTTTTAGCGAACAAAAGTTAGCTGATATTCTTGAGACTTTACATCATCAAGACGTGAAAATAAAAGCATTGATCGA
ACCAGAATTTGCTTTTCGCAACTATAGTGAAAGTTTAGATATGCTGGGCGTTGCTTTGAGCGAAAAATGTCAATATGAAG
AAAATAATCGTCCTTGGCGAGTTCCCCTCGCTACGGTAGGCATTCCTCAAATGCCTCAAGGCGATAAGCTCCATCACAAA
TTTGGTATTGTAGATAGAGATATTGTTATTACAGGATCTCACAATTGGTCGGCAGCCGCTAACTATTATAATGACGAGAC
TTTATTAGTTGTTGAAAGTTCTCAGGTTGCAGCTCATTTTATTAGAGAGTTTGAGCAGTTGTATAGTAAGGCAATTTTAG
GAGTTCCCGCAACACTCCAACAAAAAATTAAAGCAGAAGCAAACAAATGTTCTTCAGCAAAAACCATTTTCTCTCCATCG
AATACCAATGGATTAATAAATATAAATATTGCCAGCCCAGAAGAATTAGAAACACTACCAGGAATTGGAGCTAAATTAGC
GCAACGTATTGTTGAAGCTCGTCAACAGCAACCATTTACTTCTCTAGAAGATTTAAAGAGAGTCTCAGGCATTAGTTCGA
GTAAACTTAAAAAAATAGAAGGTAGAGTTACTTGGTAA

Domains

Predicted by InterproScan.

PLD-like domain (PLDc_2)

(75-253)

PLD-like domain (PLDc_2)

(308-447)

Helix-hairpin-helix motif (HHH_3)

(485-544)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

51.744

94.679

0.49

Multiple sequence alignment