Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LRX85_RS09710 Genome accession   NZ_CP088894
Coordinates   2033084..2033719 (-) Length   211 a.a.
NCBI ID   WP_000264035.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XH1935     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2028084..2038719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRX85_RS09685 (LRX85_09680) - 2028140..2029120 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  LRX85_RS09690 (LRX85_09685) kdsB 2029132..2029893 (-) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LRX85_RS09695 (LRX85_09690) lpxK 2029903..2030913 (-) 1011 WP_000050447.1 tetraacyldisaccharide 4'-kinase -
  LRX85_RS09700 (LRX85_09695) msbA 2030916..2032643 (-) 1728 WP_001070725.1 lipid A export permease/ATP-binding protein MsbA -
  LRX85_RS09705 (LRX85_09700) - 2032640..2033068 (-) 429 WP_000669686.1 biopolymer transporter ExbD -
  LRX85_RS09710 (LRX85_09705) exbB 2033084..2033719 (-) 636 WP_000264035.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LRX85_RS09715 (LRX85_09710) - 2033769..2034656 (-) 888 WP_000023427.1 ParB/RepB/Spo0J family partition protein -
  LRX85_RS09720 (LRX85_09715) - 2034653..2035435 (-) 783 WP_000057212.1 ParA family protein -
  LRX85_RS09725 (LRX85_09720) rsmG 2035457..2036089 (-) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  LRX85_RS09730 (LRX85_09725) murU 2036177..2036866 (-) 690 WP_000646451.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  LRX85_RS09735 (LRX85_09730) - 2036866..2037879 (-) 1014 WP_001096102.1 phosphotransferase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23211.10 Da        Isoelectric Point: 6.4861

>NTDB_id=547567 LRX85_RS09710 WP_000264035.1 2033084..2033719(-) (exbB) [Acinetobacter baumannii strain XH1935]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDNNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=547567 LRX85_RS09710 WP_000264035.1 2033084..2033719(-) (exbB) [Acinetobacter baumannii strain XH1935]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAACAGGATAATAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCTCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCGCCGCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCGACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393