Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   J3J51_RS09920 Genome accession   NZ_CP071759
Coordinates   2138174..2139682 (-) Length   502 a.a.
NCBI ID   WP_207865819.1    Uniprot ID   -
Organism   Burkholderia pseudomallei strain VBP21885     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2133174..2144682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3J51_RS09895 (J3J51_09895) - 2134188..2134820 (-) 633 WP_151270666.1 LON peptidase substrate-binding domain-containing protein -
  J3J51_RS09900 (J3J51_09900) rapZ 2134847..2135740 (-) 894 WP_004195227.1 RNase adapter RapZ -
  J3J51_RS09905 (J3J51_09905) hprK 2135826..2136794 (-) 969 WP_004195225.1 HPr(Ser) kinase/phosphatase -
  J3J51_RS09910 (J3J51_09910) ptsN 2136923..2137432 (-) 510 WP_004534308.1 PTS IIA-like nitrogen regulatory protein PtsN -
  J3J51_RS09915 (J3J51_09915) raiA 2137665..2138024 (-) 360 WP_004195219.1 ribosome-associated translation inhibitor RaiA -
  J3J51_RS09920 (J3J51_09920) rpoN/rpoN1 2138174..2139682 (-) 1509 WP_207865819.1 RNA polymerase factor sigma-54 Machinery gene
  J3J51_RS09925 (J3J51_09925) lptB 2139851..2140627 (-) 777 WP_004195214.1 LPS export ABC transporter ATP-binding protein -
  J3J51_RS09930 (J3J51_09930) lptA 2140624..2141289 (-) 666 WP_009936242.1 lipopolysaccharide transport periplasmic protein LptA -
  J3J51_RS09935 (J3J51_09935) lptC 2141308..2141922 (-) 615 WP_004522855.1 LPS export ABC transporter periplasmic protein LptC -
  J3J51_RS09940 (J3J51_09940) - 2141928..2142467 (-) 540 WP_004200146.1 HAD family hydrolase -
  J3J51_RS09945 (J3J51_09945) kdsD 2142467..2143450 (-) 984 WP_004195206.1 arabinose 5-phosphate isomerase KdsD -

Sequence

Protein


Download         Length: 502 a.a.        Molecular weight: 54932.07 Da        Isoelectric Point: 4.9355

>NTDB_id=547499 J3J51_RS09920 WP_207865819.1 2138174..2139682(-) (rpoN/rpoN1) [Burkholderia pseudomallei strain VBP21885]
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVATAIAQNPLLENDDDWIASPLRVAADGSVIAQTPASSAPEPMA
GAPNGTAATNERTERDETAGVDEYDSYSADGGDASQWNLDDFGRSPAASDDDDLPPMQIHETSTSLRDHLMAQLRVTQAS
PRDRALVTFLIESLDDDGYLSASLEEVRADLPAELEVDVDELNAALALVHSFDPAGVGARSASECLKLQLLRLDPSPTRA
LALDIVSQHLELLAARDFTRLRKQLKATDDALRDAHALIRSLEPFPGAAYGKAEADYVVPDIIVKKAGQNWQAELNPEVV
PKLRINNLYANILRNSRGDPSAGSLKQQLQEARWLIKNIQQRFETILRVAQAIVERQKNFFAHGEIAMRPLVLREIADTL
GLHESTVSRVTTGKYMLTPFGTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAEDPKSPLSDSRIAELLAEQGFVVA
RRTVAKYREALKIPAVNLRKSL

Nucleotide


Download         Length: 1509 bp        

>NTDB_id=547499 J3J51_RS09920 WP_207865819.1 2138174..2139682(-) (rpoN/rpoN1) [Burkholderia pseudomallei strain VBP21885]
ATGAAAGCCAGTCTTCAACTTCGCCTGTCGCAGCATCTCGCGCTCACGCCCCAGCTTCAGCAGTCGATCCGGCTGCTGCA
ACTGTCGACGCTCGAACTGCAACAGGAAGTCGCGACGGCGATCGCGCAGAACCCGCTGCTCGAGAACGACGATGACTGGA
TCGCGAGCCCGTTGCGCGTCGCGGCCGACGGCTCGGTGATCGCGCAGACGCCCGCGTCGTCCGCGCCCGAGCCGATGGCG
GGCGCGCCGAACGGCACGGCTGCGACCAATGAGCGCACCGAGCGCGACGAAACCGCCGGCGTCGACGAATACGACAGCTA
TTCGGCCGACGGCGGCGACGCGAGCCAGTGGAACCTCGACGACTTCGGCCGCTCGCCCGCCGCGTCCGACGACGACGATC
TGCCGCCGATGCAGATCCACGAGACGTCGACGTCGCTGCGCGATCATCTGATGGCGCAGTTGCGCGTCACGCAGGCGAGC
CCGCGCGATCGCGCGCTCGTCACGTTCCTGATCGAATCGCTCGACGACGACGGCTACCTGAGCGCGTCGCTCGAGGAAGT
GCGCGCCGATCTGCCGGCGGAGCTCGAGGTCGACGTCGACGAACTGAACGCGGCGCTCGCGCTCGTGCACAGCTTCGATC
CGGCGGGCGTCGGCGCGCGCTCCGCGTCCGAATGCCTGAAGCTGCAGTTGCTGCGCCTGGATCCGTCCCCGACGCGCGCG
CTCGCGCTCGATATCGTGTCGCAGCATCTGGAGCTGCTCGCCGCGCGCGATTTCACGCGCCTGCGCAAGCAACTGAAGGC
GACCGACGACGCGCTGCGCGACGCGCACGCGCTGATCCGCTCGCTCGAGCCGTTCCCCGGCGCGGCGTACGGCAAGGCCG
AAGCCGATTACGTGGTGCCCGACATCATCGTGAAGAAGGCCGGCCAGAACTGGCAGGCGGAACTCAATCCGGAAGTGGTG
CCGAAGCTGCGGATCAACAATCTTTACGCGAACATCCTGCGCAACAGCCGGGGCGATCCGAGCGCGGGATCGCTGAAGCA
ACAGCTTCAGGAAGCGCGCTGGCTGATCAAGAACATTCAGCAGCGGTTCGAGACGATCCTGCGCGTCGCGCAGGCGATTG
TCGAGCGTCAGAAGAATTTCTTCGCGCACGGCGAAATTGCGATGCGCCCCTTGGTTTTGCGGGAAATAGCTGATACGCTG
GGCCTACACGAGTCGACTGTCTCCCGTGTGACAACCGGCAAGTACATGCTGACCCCGTTCGGCACACTTGAATTTAAGTA
CTTCTTCGGATCGCACGTATCGACAGACACCGGAGGTGCCGCGTCGTCGACAGCGATCCGCGCCCTCATCAAACAACTGA
TAGGAGCCGAAGACCCCAAATCCCCTCTTTCGGACAGTCGCATAGCCGAGCTGCTAGCGGAACAAGGGTTCGTGGTCGCG
CGCCGCACGGTTGCCAAATATCGCGAAGCCCTCAAGATCCCGGCGGTGAATCTGCGCAAGTCTCTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(345-500)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(138-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

68.515

100

0.689