Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NOS7524_RS13515 Genome accession   NC_019684
Coordinates   3368109..3369674 (+) Length   521 a.a.
NCBI ID   WP_015139036.1    Uniprot ID   -
Organism   Nostoc sp. PCC 7524     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3363109..3374674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NOS7524_RS13485 (Nos7524_2764) - 3363623..3364012 (-) 390 WP_041555314.1 hypothetical protein -
  NOS7524_RS13490 (Nos7524_2765) - 3364627..3364977 (+) 351 WP_015139031.1 phage holin family protein -
  NOS7524_RS13495 (Nos7524_2766) - 3365076..3365867 (+) 792 WP_015139032.1 superoxide dismutase -
  NOS7524_RS13500 (Nos7524_2767) - 3365917..3366435 (-) 519 WP_015139033.1 DUF456 family protein -
  NOS7524_RS13505 (Nos7524_2768) - 3366438..3367085 (-) 648 WP_015139034.1 cofactor assembly of complex C subunit B -
  NOS7524_RS13510 (Nos7524_2769) - 3367199..3367927 (-) 729 WP_015139035.1 response regulator transcription factor -
  NOS7524_RS13515 (Nos7524_2770) radA 3368109..3369674 (+) 1566 WP_015139036.1 DNA repair protein RadA Machinery gene
  NOS7524_RS13520 (Nos7524_2771) - 3369766..3370521 (+) 756 WP_015139037.1 Uma2 family endonuclease -
  NOS7524_RS28665 (Nos7524_2773) - 3370721..3370861 (-) 141 Protein_2740 UPF0175 family protein -
  NOS7524_RS13525 (Nos7524_2774) - 3370938..3373745 (-) 2808 WP_041555315.1 pentapeptide repeat-containing protein -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 56050.85 Da        Isoelectric Point: 4.8471

>NTDB_id=54741 NOS7524_RS13515 WP_015139036.1 3368109..3369674(+) (radA) [Nostoc sp. PCC 7524]
MAKPKTVYICNECGAESSQWFGKCPNCGTYNSLEEQLLIQSSVDIPSRGGVGGWHSSQGNGKPPSKPAKPRASLTFDQIS
DRQVTRWESGYGELDRVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSNQLAQRYRILYVSGEESGQQVKLRASRLGVSKPL
SMLEDENGTTAEQTPETEASGETTAENHHPSEAPESIDASLYILPETDLEEILREIDSLKPNVAVIDSIQTVFFPALTSA
PGSVAQVRECTAALMKVAKHEDITMLIVGHVTKEGAIAGPKVLEHLVDTVLYFEGDRFASHRLLRTVKNRFGATHEIGIF
EMVQHGLREVPNPSELFLGNRDDPAPGTAIVVACEGTRPIVVELQALVSPTSYPSPRRAGTGIDYNRLVQILAVLEKRVG
IPMSKLDSYVASAGGLSVEEPAVDLGIAIAIVASFRDRIVDPGTVLIGEVGLGGQVRAVSQMELRLKEAAKLGFKRAIIP
KGQKFPDFDIEILPVSKVIDAIIAAIPHQELTAEDLDIDEE

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=54741 NOS7524_RS13515 WP_015139036.1 3368109..3369674(+) (radA) [Nostoc sp. PCC 7524]
ATGGCAAAGCCCAAAACAGTTTACATTTGTAATGAATGTGGAGCCGAATCTTCCCAGTGGTTTGGTAAGTGTCCCAATTG
TGGTACTTACAACTCCTTAGAAGAGCAACTTCTGATTCAATCTTCCGTAGATATTCCTAGTCGTGGAGGGGTAGGTGGTT
GGCATTCATCTCAGGGTAACGGCAAACCGCCCAGCAAGCCAGCAAAACCACGAGCTTCTTTAACATTTGACCAAATTAGC
GATCGCCAAGTCACTCGTTGGGAATCTGGTTATGGCGAGTTAGATCGGGTACTCGGCGGTGGTGTAGTTCCCGGCTCAAT
GGTGTTAATTGGCGGCGATCCCGGTATTGGGAAATCAACCTTATTATTGCAAGTCTCCAATCAATTAGCGCAGAGATACC
GCATCCTTTATGTATCGGGAGAAGAATCGGGACAGCAGGTAAAATTACGCGCCTCTCGCTTGGGTGTCTCCAAACCCCTG
AGTATGCTGGAAGATGAAAACGGTACTACAGCAGAACAGACACCTGAAACAGAAGCCTCTGGGGAAACAACGGCAGAAAA
TCACCATCCATCAGAAGCACCTGAAAGTATAGACGCAAGTTTGTATATCCTACCGGAAACAGATTTAGAAGAAATTTTAC
GGGAAATCGATTCCTTAAAACCCAATGTGGCGGTGATTGATAGTATTCAAACTGTGTTTTTTCCAGCTTTGACATCAGCA
CCCGGTTCGGTAGCCCAGGTAAGAGAATGTACGGCAGCATTGATGAAAGTTGCCAAGCATGAAGACATCACAATGTTAAT
TGTGGGACACGTCACCAAAGAAGGTGCGATCGCCGGGCCGAAAGTCTTAGAACACCTAGTTGATACAGTATTGTATTTTG
AAGGCGATCGCTTTGCCTCCCACCGCTTGTTAAGAACTGTCAAAAACCGGTTTGGTGCAACCCACGAAATCGGCATCTTT
GAAATGGTGCAACACGGTTTGCGGGAAGTACCTAACCCCAGTGAATTATTTTTAGGCAACCGTGATGATCCCGCACCCGG
TACAGCTATTGTTGTAGCTTGCGAAGGTACACGCCCCATCGTCGTAGAGTTACAAGCCTTAGTCAGCCCCACCAGTTACC
CCTCACCCCGTCGGGCGGGAACTGGCATAGATTACAACCGCTTAGTGCAAATTCTCGCCGTCTTAGAAAAGCGCGTGGGG
ATTCCTATGTCCAAATTAGATTCCTACGTTGCTTCCGCCGGTGGTTTAAGTGTGGAAGAACCAGCCGTAGATTTAGGAAT
TGCCATTGCTATTGTTGCTAGTTTCCGCGATCGCATCGTTGATCCCGGTACAGTATTAATCGGTGAAGTCGGCTTAGGTG
GACAAGTGCGAGCCGTTTCTCAGATGGAACTGCGGTTAAAAGAAGCCGCTAAACTAGGATTTAAACGAGCGATCATCCCC
AAAGGTCAAAAATTCCCCGACTTTGACATCGAAATTTTACCAGTTTCCAAAGTAATAGATGCGATTATTGCCGCCATCCC
CCATCAAGAATTGACAGCCGAAGACTTGGATATAGACGAAGAATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(416-481)

KaiC (ATPase)

(90-310)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.507

97.313

0.482
  radA Streptococcus mitis SK321

44.554

96.929

0.432
  radA Streptococcus pneumoniae Rx1

46.154

92.322

0.426
  radA Streptococcus pneumoniae D39

46.154

92.322

0.426
  radA Streptococcus pneumoniae R6

46.154

92.322

0.426
  radA Streptococcus pneumoniae TIGR4

46.154

92.322

0.426
  radA Streptococcus mitis NCTC 12261

46.154

92.322

0.426

Multiple sequence alignment