Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   LYSZa5_RS06825 Genome accession   NZ_CP071730
Coordinates   1424781..1425338 (+) Length   185 a.a.
NCBI ID   WP_023132294.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain LYSZa5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1419781..1430338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LYSZa5_RS06805 (LYSZa5_06805) pilR 1421057..1422394 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  LYSZa5_RS06810 (LYSZa5_06810) thiO 1422440..1423534 (-) 1095 WP_003119424.1 glycine oxidase ThiO -
  LYSZa5_RS06815 (LYSZa5_06815) - 1423669..1424178 (+) 510 WP_003102595.1 Tfp pilus assembly protein FimT/FimU -
  LYSZa5_RS06820 (LYSZa5_06820) - 1424284..1424790 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  LYSZa5_RS06825 (LYSZa5_06825) pilV 1424781..1425338 (+) 558 WP_023132294.1 type 4a pilus minor pilin PilV Machinery gene
  LYSZa5_RS06830 (LYSZa5_06830) pilW 1425335..1426159 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  LYSZa5_RS06835 (LYSZa5_06835) pilX 1426156..1426743 (+) 588 WP_023090846.1 type 4a pilus minor pilin PilX -
  LYSZa5_RS06840 (LYSZa5_06840) pilY1 1426755..1430246 (+) 3492 WP_023132295.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20045.15 Da        Isoelectric Point: 8.2255

>NTDB_id=547330 LYSZa5_RS06825 WP_023132294.1 1424781..1425338(+) (pilV) [Pseudomonas aeruginosa strain LYSZa5]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGAAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=547330 LYSZa5_RS06825 WP_023132294.1 1424781..1425338(+) (pilV) [Pseudomonas aeruginosa strain LYSZa5]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGGCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

98.919

100

0.989