Detailed information NTG0547330

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: LRM32_RS22250
• Genome accession: NZ_CP088131
• Coordinates: 4553679..4554704 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain 81
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4548679..4559704

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LRM32_RS22225 (LRM32_22225)	metJ	4549116..4549433 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
LRM32_RS22230 (LRM32_22230)	yiiX	4549617..4550225 (+)	609	WP_000797341.1	YiiX family permuted papain-like enzyme	-
LRM32_RS22235 (LRM32_22235)	-	4550232..4550855 (+)	624	WP_000720774.1	TIGR02117 family protein	-
LRM32_RS22240 (LRM32_22240)	rpmE	4550910..4551122 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
LRM32_RS22245 (LRM32_22245)	priA	4551325..4553523 (+)	2199	WP_001295520.1	primosomal protein N'	Machinery gene
LRM32_RS22250 (LRM32_22250)	cytR	4553679..4554704 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
LRM32_RS22255 (LRM32_22255)	ftsN	4554796..4555755 (+)	960	WP_071598226.1	cell division protein FtsN	-
LRM32_RS22260 (LRM32_22260)	hslV	4555848..4556378 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
LRM32_RS22265 (LRM32_22265)	hslU	4556388..4557719 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
LRM32_RS22270 (LRM32_22270)	menA	4557786..4558712 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
LRM32_RS22275 (LRM32_22275)	rraA	4558805..4559290 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
LRM32_RS22280 (LRM32_22280)	zapB	4559375..4559620 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=547330 LRM32_RS22250 WP_000644904.1 4553679..4554704(+) (cytR) [Escherichia coli strain 81]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=547330 LRM32_RS22250 WP_000644904.1 4553679..4554704(+) (cytR) [Escherichia coli strain 81]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGTTACGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCAGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGTCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628