Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JQM62_RS04900 Genome accession   NZ_CP071711
Coordinates   915380..916009 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain EC20017429     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 899318..927183 915380..916009 within 0


Gene organization within MGE regions


Location: 899318..927183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQM62_RS04820 (JQM62_04780) dicB 901073..901261 (+) 189 WP_000413705.1 cell division inhibition protein DicB -
  JQM62_RS04825 (JQM62_04785) - 901258..901449 (+) 192 WP_001098307.1 DUF1482 family protein -
  JQM62_RS04830 (JQM62_04790) - 901543..904014 (+) 2472 WP_000034468.1 exonuclease -
  JQM62_RS04835 (JQM62_04795) - 904082..904324 (+) 243 WP_000273151.1 DUF4224 domain-containing protein -
  JQM62_RS04840 (JQM62_04800) - 904302..905321 (+) 1020 WP_001299351.1 tyrosine-type recombinase/integrase -
  JQM62_RS04845 (JQM62_04805) yccA 905729..906388 (+) 660 WP_000375136.1 FtsH protease modulator YccA -
  JQM62_RS04850 (JQM62_04810) tusE 906479..906808 (+) 330 WP_000904444.1 sulfurtransferase TusE -
  JQM62_RS04855 (JQM62_04815) yccX 906805..907083 (-) 279 WP_000048255.1 acylphosphatase -
  JQM62_RS04860 (JQM62_04820) rlmI 907178..908368 (+) 1191 WP_000116292.1 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI -
  JQM62_RS04865 (JQM62_04825) hspQ 908426..908743 (+) 318 WP_001295356.1 heat shock protein HspQ -
  JQM62_RS04870 (JQM62_04830) yccU 908788..909201 (-) 414 WP_000665217.1 CoA-binding protein -
  JQM62_RS04875 (JQM62_04835) yccT 909374..910036 (+) 663 WP_000847791.1 DUF2057 family protein -
  JQM62_RS04880 (JQM62_04840) mgsA 910132..910590 (+) 459 WP_000424181.1 methylglyoxal synthase -
  JQM62_RS04885 (JQM62_04845) helD 910622..912676 (-) 2055 WP_000420533.1 DNA helicase IV -
  JQM62_RS04890 (JQM62_04850) yccF 912799..913245 (+) 447 WP_001261231.1 YccF domain-containing protein -
  JQM62_RS04895 (JQM62_04855) yccS 913255..915417 (+) 2163 WP_000875044.1 YccS family putative transporter -
  JQM62_RS04900 (JQM62_04860) sxy/tfoX 915380..916009 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  JQM62_RS04905 (JQM62_04865) sulA 916228..916737 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  JQM62_RS04910 (JQM62_04870) ompA 917094..918134 (+) 1041 WP_000750416.1 porin OmpA -
  JQM62_RS04915 (JQM62_04875) matP 918210..918662 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  JQM62_RS04920 (JQM62_04880) ycbZ 918848..920608 (+) 1761 WP_000156526.1 Lon protease family protein -
  JQM62_RS04925 (JQM62_04885) fabA 920677..921195 (+) 519 WP_000227927.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  JQM62_RS04930 (JQM62_04890) rmf 921265..921432 (-) 168 WP_000828648.1 ribosome modulation factor -
  JQM62_RS04935 (JQM62_04895) pqiC 921688..922251 (-) 564 WP_000759100.1 membrane integrity-associated transporter subunit PqiC -
  JQM62_RS04940 (JQM62_04900) pqiB 922248..923888 (-) 1641 WP_000445533.1 intermembrane transport protein PqiB -
  JQM62_RS04945 (JQM62_04905) pqiA 923893..925146 (-) 1254 WP_000333173.1 membrane integrity-associated transporter subunit PqiA -
  JQM62_RS04950 (JQM62_04910) uup 925276..927183 (-) 1908 WP_000053079.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=547228 JQM62_RS04900 WP_000839153.1 915380..916009(-) (sxy/tfoX) [Escherichia coli strain EC20017429]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=547228 JQM62_RS04900 WP_000839153.1 915380..916009(-) (sxy/tfoX) [Escherichia coli strain EC20017429]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1