Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   J1899_RS14820 Genome accession   NZ_CP071709
Coordinates   2991878..2993566 (-) Length   562 a.a.
NCBI ID   WP_066443790.1    Uniprot ID   -
Organism   Cytobacillus gottheilii strain 1839     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2986878..2998566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1899_RS14800 (J1899_14805) - 2988589..2988846 (+) 258 WP_066443801.1 DUF2627 domain-containing protein -
  J1899_RS14805 (J1899_14810) - 2988843..2989001 (+) 159 WP_214474922.1 YycC family protein -
  J1899_RS14810 (J1899_14815) spo0A 2989138..2989929 (-) 792 WP_214474924.1 sporulation transcription factor Spo0A -
  J1899_RS14815 (J1899_14820) spoIVB 2990466..2991755 (-) 1290 WP_214474926.1 SpoIVB peptidase -
  J1899_RS14820 (J1899_14825) recN 2991878..2993566 (-) 1689 WP_066443790.1 DNA repair protein RecN Machinery gene
  J1899_RS14825 (J1899_14830) argR 2993583..2994032 (-) 450 WP_066443788.1 transcriptional regulator ArgR -
  J1899_RS14830 (J1899_14835) - 2994322..2995167 (-) 846 WP_214474928.1 TlyA family RNA methyltransferase -
  J1899_RS14835 (J1899_14840) dxs 2995171..2997063 (-) 1893 WP_214478859.1 1-deoxy-D-xylulose-5-phosphate synthase -
  J1899_RS14840 (J1899_14845) - 2997226..2998116 (-) 891 WP_066443782.1 polyprenyl synthetase family protein -
  J1899_RS14845 (J1899_14850) - 2998121..2998354 (-) 234 WP_066443781.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 562 a.a.        Molecular weight: 63556.39 Da        Isoelectric Point: 5.0629

>NTDB_id=547205 J1899_RS14820 WP_066443790.1 2991878..2993566(-) (recN) [Cytobacillus gottheilii strain 1839]
MLNELCIRNFAIIEGLEISFEKGLTVLSGETGAGKSIIIDAIHLLVGGRGSSEFVRHGEDKAEIEGLFLLDDKNHPSYKK
AAEFGIDIDDGMVVLRRDISKSGKSVCRVNGKLVTISTLREFGSALIDIHGQHEHQELMDESLHLNLLDQFGGEKIRAAI
HEYEDIYHSYEETNKRLKSLNENEQQMAHRLDLIQFQLEEIQSANLKLNEDEELIEEKRKLANFESIYDAMQTGYNALQG
EQRGIDWLSLAVSNLETAAELEPKYKELAESVSSSFYQMEDAVRTIRNELDYLEFDPGRLNEIEERLNEIHQLKRKYGKS
VLDILEYASKIEEEIETLLNKETHIDQLEKQAAMLKKDLLVEAAELSKLRKNAAVQLTKLIHKELKELYMEKTVFEVVFS
NEEDRFYKNGIDEAEFYISTNPGEPLKPLSKIASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVSGRVAQSIAEKIH
HVAIGSQVLCISHLPQVAAMADTHLFIAKNTKNGRTKTTVKPLTDEEKVKEIGRMISGVEITDLTKEHAKELLKLARQIK
IP

Nucleotide


Download         Length: 1689 bp        

>NTDB_id=547205 J1899_RS14820 WP_066443790.1 2991878..2993566(-) (recN) [Cytobacillus gottheilii strain 1839]
ATGTTAAATGAGCTTTGTATAAGAAATTTTGCTATAATTGAAGGCTTGGAAATTTCGTTTGAAAAAGGGTTAACCGTACT
ATCTGGAGAAACAGGAGCAGGTAAATCAATCATAATTGATGCTATTCACTTGCTGGTTGGAGGCAGGGGTTCGAGTGAAT
TTGTCAGACACGGGGAAGATAAAGCCGAAATTGAAGGACTCTTTCTTCTCGATGACAAAAATCATCCCAGCTACAAAAAA
GCAGCCGAATTTGGGATCGACATTGACGATGGCATGGTTGTTTTGCGCCGTGATATTTCTAAATCCGGCAAAAGTGTGTG
CCGTGTAAACGGTAAGCTTGTGACGATTTCGACATTAAGAGAATTCGGAAGTGCATTAATTGATATACATGGCCAGCATG
AGCATCAGGAGCTTATGGACGAATCCTTGCATTTGAACTTGCTGGATCAATTTGGCGGAGAAAAAATCCGTGCAGCCATT
CATGAATATGAGGACATCTACCACTCATATGAGGAGACAAATAAAAGACTAAAAAGTCTGAATGAAAATGAACAGCAGAT
GGCCCATCGTCTGGATTTAATTCAGTTTCAATTAGAAGAAATTCAATCAGCGAATTTAAAATTAAATGAAGATGAAGAAC
TGATTGAAGAGAAAAGGAAGCTGGCCAACTTTGAAAGCATTTACGATGCCATGCAGACTGGCTATAATGCACTGCAGGGA
GAGCAAAGAGGAATTGACTGGCTGAGCCTTGCTGTCAGCAATTTGGAGACTGCTGCTGAATTAGAGCCGAAATACAAAGA
GTTAGCAGAATCTGTTTCAAGCAGTTTTTATCAAATGGAAGACGCGGTCAGAACCATTCGCAATGAATTGGATTATCTTG
AATTTGATCCTGGACGGCTCAATGAAATTGAGGAAAGATTAAATGAAATTCATCAATTAAAGAGGAAATATGGTAAAAGT
GTTCTTGATATTTTAGAATATGCCTCCAAAATTGAAGAAGAAATTGAAACGCTCCTCAATAAAGAAACACATATTGATCA
GCTCGAAAAACAAGCTGCCATGCTTAAAAAAGATCTCTTAGTGGAAGCGGCAGAACTAAGTAAACTGCGAAAAAATGCAG
CTGTCCAGCTAACAAAATTAATTCATAAGGAATTAAAAGAGTTATATATGGAAAAGACTGTATTTGAGGTTGTTTTTTCA
AATGAAGAAGACCGATTTTATAAAAATGGCATAGATGAAGCTGAATTTTATATATCAACAAATCCTGGCGAGCCTTTAAA
GCCGCTTTCGAAAATTGCTTCAGGCGGAGAACTGTCGCGGATTATGCTGGCATTAAAAAGCATCTTTTCCAAACATCAGG
GCGTTACCTCGATCATTTTTGATGAGGTGGATACCGGTGTAAGCGGAAGGGTTGCTCAATCGATTGCTGAAAAGATCCAT
CATGTTGCCATTGGCTCACAGGTGCTCTGCATATCTCATCTTCCGCAAGTAGCGGCGATGGCAGATACACATCTCTTTAT
TGCGAAAAATACAAAAAATGGACGAACCAAAACAACGGTAAAGCCTTTAACTGATGAAGAGAAGGTAAAAGAAATTGGAA
GAATGATTTCAGGTGTTGAAATTACGGATTTAACGAAGGAACATGCCAAGGAATTACTGAAGCTTGCCCGTCAAATTAAA
ATACCATGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

63.24

100

0.646