Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   LQT99_RS17375 Genome accession   NZ_CP088005
Coordinates   3515114..3516244 (-) Length   376 a.a.
NCBI ID   WP_007407584.1    Uniprot ID   A7Z9N9
Organism   Bacillus amyloliquefaciens strain bm     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3510114..3521244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQT99_RS17340 (LQT99_17300) - 3510734..3510910 (-) 177 WP_223204425.1 hypothetical protein -
  LQT99_RS17345 (LQT99_17305) - 3510956..3511360 (-) 405 WP_032875964.1 Rrf2 family transcriptional regulator -
  LQT99_RS17350 (LQT99_17310) ureC 3511502..3513211 (-) 1710 WP_032875961.1 urease subunit alpha -
  LQT99_RS17355 (LQT99_17315) ureB 3513208..3513582 (-) 375 WP_003151199.1 urease subunit beta -
  LQT99_RS17360 (LQT99_17320) ureA 3513579..3513896 (-) 318 WP_007407581.1 urease subunit gamma -
  LQT99_RS17365 (LQT99_17325) - 3514250..3514438 (-) 189 WP_003151197.1 CsbD family protein -
  LQT99_RS17370 (LQT99_17330) - 3514513..3514992 (-) 480 WP_012118654.1 hypothetical protein -
  LQT99_RS17375 (LQT99_17335) rapC 3515114..3516244 (-) 1131 WP_007407584.1 tetratricopeptide repeat protein Regulator
  LQT99_RS17380 (LQT99_17340) moaA 3516435..3517460 (-) 1026 WP_032875958.1 GTP 3',8-cyclase MoaA -
  LQT99_RS17385 (LQT99_17345) fdhD 3517478..3518266 (-) 789 WP_032875955.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  LQT99_RS17390 (LQT99_17350) - 3518361..3518525 (-) 165 WP_003151191.1 hypothetical protein -
  LQT99_RS17395 (LQT99_17355) - 3518611..3519291 (-) 681 WP_012118657.1 VWA domain-containing protein -
  LQT99_RS17400 (LQT99_17360) - 3519601..3520287 (-) 687 WP_007407590.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44934.03 Da        Isoelectric Point: 5.3221

>NTDB_id=547198 LQT99_RS17375 WP_007407584.1 3515114..3516244(-) (rapC) [Bacillus amyloliquefaciens strain bm]
MTAYEIPSSQVGVKINKWYKHILAFQAADAIKLKEEIDEDIQRMEEDQLLLLYYQLISYRHHIMLDYVKPECTEQSQIQY
SELQKTIESTDSISGLSEYYFHLFRGMYEFDHNNYVAAISFYRKAEKLLSFVEDDIERAEFHFKMSEVFYVMKQTHFSMN
HGIQALDTYMKHDFYRVRRIQCHFVISGNYIDCKNYDKALEHLDEALRLSLLEGQPRLIGSSLYNLGNCYSEKRDLDEAA
RYFRKAVPVFEEHQLEQLPKALFSLTHTLFRLHDDQAALTYYERGVMIAKERGDRFSLEKYKFLQALYLESLNMDLIHEV
FDYMNEKSLYVYIEDFALEAAVYTSAHEQYKEAAYFYEKAIRMRENIQKEQCLYDI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=547198 LQT99_RS17375 WP_007407584.1 3515114..3516244(-) (rapC) [Bacillus amyloliquefaciens strain bm]
ATGACCGCATACGAGATTCCGTCATCTCAAGTTGGAGTTAAGATCAACAAATGGTACAAGCACATTTTAGCGTTTCAAGC
GGCTGATGCCATAAAGCTGAAAGAGGAAATTGATGAGGATATACAACGTATGGAGGAAGACCAGCTGCTGCTGTTATATT
ATCAGCTGATCAGCTACCGCCATCATATTATGCTTGATTACGTCAAGCCGGAATGCACCGAACAATCACAGATTCAGTAC
AGCGAGCTGCAAAAGACGATCGAAAGCACGGACAGCATATCGGGACTGTCTGAGTATTATTTCCATTTGTTCAGAGGGAT
GTATGAATTCGATCACAATAACTATGTTGCGGCTATTTCTTTTTACCGGAAAGCGGAAAAACTCCTTTCATTTGTCGAGG
ATGATATAGAGAGGGCGGAATTCCATTTCAAGATGTCTGAAGTGTTTTATGTCATGAAGCAGACTCATTTTTCCATGAAT
CACGGGATTCAGGCGCTGGATACGTATATGAAACACGATTTCTACAGAGTGCGGAGAATTCAATGCCATTTCGTCATCTC
AGGAAACTACATCGACTGCAAAAACTACGACAAAGCGCTTGAGCATTTAGACGAAGCCCTCCGCCTTTCTTTGCTTGAAG
GACAGCCCCGCCTGATCGGGTCTTCGCTTTACAATCTGGGGAATTGTTATTCTGAAAAGCGCGATCTGGATGAAGCGGCC
CGGTACTTTAGAAAAGCGGTTCCCGTTTTTGAAGAGCATCAGCTTGAACAGCTTCCGAAGGCGCTGTTCAGCTTAACGCA
CACCCTTTTCAGGCTGCATGATGACCAAGCGGCCCTTACCTATTATGAAAGAGGGGTCATGATCGCGAAAGAACGGGGCG
ACCGATTCAGTTTAGAGAAGTATAAGTTTTTACAAGCGCTTTATTTGGAGTCACTCAATATGGATTTAATCCATGAAGTG
TTTGACTATATGAATGAAAAATCGCTGTATGTGTATATTGAAGATTTCGCCTTGGAGGCCGCCGTTTACACAAGCGCACA
TGAGCAATATAAAGAAGCGGCGTATTTTTATGAAAAAGCGATTCGCATGAGAGAAAACATTCAAAAAGAACAGTGTTTAT
ACGATATATAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)

Tetratricopeptide repeat (TPR_12)

(192-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z9N9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

41.842

100

0.423
  rapF Bacillus subtilis subsp. subtilis str. 168

40

99.734

0.399