Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   J1899_RS07585 Genome accession   NZ_CP071709
Coordinates   1547957..1549777 (+) Length   606 a.a.
NCBI ID   WP_214478279.1    Uniprot ID   -
Organism   Cytobacillus gottheilii strain 1839     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1542957..1554777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1899_RS07565 (J1899_07570) - 1543744..1544319 (+) 576 WP_214478276.1 GNAT family N-acetyltransferase -
  J1899_RS07570 (J1899_07575) spxA 1544980..1545375 (+) 396 WP_066447509.1 transcriptional regulator SpxA -
  J1899_RS07575 (J1899_07580) mecA 1545761..1546429 (+) 669 WP_214478277.1 adaptor protein MecA -
  J1899_RS07580 (J1899_07585) - 1546590..1547804 (+) 1215 WP_246586696.1 competence protein CoiA family protein -
  J1899_RS07585 (J1899_07590) pepF 1547957..1549777 (+) 1821 WP_214478279.1 oligoendopeptidase F Regulator
  J1899_RS07590 (J1899_07595) - 1549898..1550071 (-) 174 WP_180320235.1 hypothetical protein -
  J1899_RS07595 (J1899_07600) - 1550462..1551313 (-) 852 WP_066451660.1 ClpXP adapter SpxH family protein -
  J1899_RS07600 (J1899_07605) - 1551340..1551747 (-) 408 WP_214478280.1 globin -
  J1899_RS07605 (J1899_07610) - 1552131..1552778 (-) 648 WP_066447494.1 transglycosylase SLT domain-containing protein -
  J1899_RS07610 (J1899_07615) - 1552836..1553429 (-) 594 WP_066447491.1 CYTH domain-containing protein -
  J1899_RS07615 (J1899_07620) - 1553611..1554000 (+) 390 WP_066447486.1 hypothetical protein -

Sequence

Protein


Download         Length: 606 a.a.        Molecular weight: 69625.91 Da        Isoelectric Point: 4.7222

>NTDB_id=547196 J1899_RS07585 WP_214478279.1 1547957..1549777(+) (pepF) [Cytobacillus gottheilii strain 1839]
MTNETAAVQKLPARSEIAVEDTWRLEDIFETDEVWEKEFKAVEALIPDASKYEGKLGESADVLYEALQYQDHLLSRLSKL
YTYAHMKYDQDTTNSKYQGMEDRIKTVYSKAGAALAYVVPELLAIEEKKVEGFLEEKEELKLYKQALDEINLQRPHVLSA
EQEALLAQASEVLGASSNTFGALNNADLEFPAIKDENGNEVEVTHGRYVRFLESDDQRVRHDAFKAVYGTYGQFKNTFAS
TLSGNVKNHNFNAQIRKYESARQAALANNNIPESVYDNLVSTINDNLHLLHRYVKLRKKVLGLEELHMYDLYTPLVKDVK
MEVSYDEAKEHILKGLAPLGEDYLNVLKEGFENRWVDVHENKGKRSGAYSSGTYGTNPYILMNWQDNVNNLFTLAHEFGH
SVHSYYTRKNQPYPYGNYSIFVAEVASTCNEALLNDYLLKTFDDDKKRLYLLNHFLEGFRGTVFRQTMFAEFEHLIHEKA
QNNEALTAESLTEAYYELNKKYFGEEDIIIDEEIGLEWSRIPHFYYNYYVYQYATGYSAATALSKQILEEGQPAVDRYVE
FLKAGSSDYPIEVLKKAGVDMTSKQAIEDACKVFEEKLNEMEELLS

Nucleotide


Download         Length: 1821 bp        

>NTDB_id=547196 J1899_RS07585 WP_214478279.1 1547957..1549777(+) (pepF) [Cytobacillus gottheilii strain 1839]
ATGACAAATGAAACTGCCGCTGTGCAAAAATTGCCGGCCAGAAGTGAAATTGCAGTTGAAGATACTTGGAGGCTAGAAGA
TATTTTTGAGACAGATGAGGTTTGGGAAAAGGAATTTAAAGCAGTTGAAGCTTTAATACCTGATGCATCCAAGTATGAAG
GTAAGCTTGGTGAAAGTGCAGACGTATTGTATGAAGCACTTCAGTATCAAGATCATTTGCTTTCAAGATTAAGCAAGCTC
TATACATATGCTCATATGAAATATGATCAGGATACAACTAATTCGAAGTATCAGGGAATGGAAGACAGAATTAAAACTGT
ATACTCGAAAGCAGGCGCTGCACTGGCTTATGTTGTGCCAGAACTTCTTGCCATTGAAGAAAAAAAGGTAGAGGGCTTTT
TAGAGGAAAAAGAAGAGCTCAAGCTTTATAAGCAAGCTCTTGATGAAATTAATTTACAGCGTCCACATGTGTTATCAGCC
GAGCAGGAGGCTTTGCTTGCACAAGCGTCAGAAGTGCTTGGGGCATCCAGCAATACATTTGGAGCACTGAATAATGCCGA
TCTTGAATTCCCGGCTATTAAAGATGAAAACGGCAATGAGGTGGAGGTCACACATGGTCGTTACGTGCGCTTCTTAGAGA
GTGATGACCAACGAGTGCGCCATGATGCATTTAAGGCAGTATACGGCACGTATGGACAGTTTAAAAATACCTTTGCAAGT
ACCTTAAGCGGAAATGTGAAAAACCATAATTTTAATGCTCAAATCAGGAAATATGAATCAGCAAGACAAGCAGCACTTGC
CAATAATAATATCCCAGAGAGTGTTTATGATAACTTAGTCAGCACAATCAATGATAACCTTCACCTGCTGCACCGCTATG
TAAAACTGCGCAAGAAAGTCCTTGGATTAGAGGAATTGCATATGTATGATCTCTATACACCTCTAGTAAAGGATGTAAAG
ATGGAGGTTTCATATGATGAGGCGAAGGAGCATATCTTAAAGGGGCTTGCACCATTAGGAGAAGACTATTTAAATGTGCT
CAAAGAGGGCTTTGAAAACCGCTGGGTGGATGTACACGAGAATAAAGGGAAAAGAAGCGGTGCTTATTCATCAGGAACTT
ATGGGACAAATCCATATATACTAATGAACTGGCAGGATAATGTAAATAATCTGTTTACTCTAGCTCATGAATTTGGTCAT
TCTGTACACAGTTATTACACAAGAAAAAACCAGCCATATCCATACGGAAATTATTCAATTTTTGTTGCTGAGGTTGCATC
CACATGCAATGAAGCTCTTTTAAATGATTACTTGCTTAAGACATTTGATGATGACAAGAAGCGTCTGTATCTCCTAAATC
ATTTCCTTGAAGGATTCAGAGGTACTGTTTTCCGTCAAACGATGTTTGCCGAATTTGAACATTTAATTCATGAGAAGGCT
CAAAACAATGAAGCATTAACAGCAGAATCATTGACTGAAGCTTATTATGAATTAAATAAGAAATATTTCGGGGAAGAAGA
TATCATTATTGACGAAGAGATTGGTCTTGAATGGTCAAGAATTCCTCATTTCTATTACAACTATTATGTTTACCAATATG
CTACAGGCTATAGTGCCGCTACAGCACTAAGCAAGCAAATTTTAGAAGAGGGACAGCCGGCAGTCGATCGCTATGTCGAA
TTCTTAAAAGCTGGAAGCTCTGATTATCCTATTGAGGTTCTGAAAAAAGCAGGTGTGGATATGACCAGCAAGCAAGCTAT
TGAAGATGCATGCAAAGTTTTTGAAGAAAAACTAAATGAGATGGAAGAACTTCTATCTTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(212-592)

Oligopeptidase F (Peptidase_M3_N)

(121-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.495

98.02

0.485