Detailed information    

insolico Bioinformatically predicted

Overview

Name   htrA   Type   Regulator
Locus tag   LQT99_RS15430 Genome accession   NZ_CP088005
Coordinates   3130266..3131627 (-) Length   453 a.a.
NCBI ID   WP_032876597.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain bm     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3125266..3136627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQT99_RS15405 (LQT99_15370) - 3125373..3126197 (-) 825 WP_012118397.1 ABC transporter ATP-binding protein -
  LQT99_RS15410 (LQT99_15375) - 3126353..3126790 (-) 438 WP_032876609.1 YusW family protein -
  LQT99_RS15415 (LQT99_15380) - 3126909..3128690 (-) 1782 WP_032876606.1 M3 family oligoendopeptidase -
  LQT99_RS15420 (LQT99_15385) - 3128823..3129665 (+) 843 WP_032876604.1 oxidoreductase -
  LQT99_RS15425 (LQT99_15390) - 3129755..3130219 (+) 465 WP_032876601.1 Dps family protein -
  LQT99_RS15430 (LQT99_15395) htrA 3130266..3131627 (-) 1362 WP_032876597.1 trypsin-like peptidase domain-containing protein Regulator
  LQT99_RS15435 (LQT99_15400) - 3131904..3132581 (+) 678 WP_032876594.1 response regulator transcription factor -
  LQT99_RS15440 (LQT99_15405) - 3132578..3133933 (+) 1356 WP_032876591.1 HAMP domain-containing sensor histidine kinase -
  LQT99_RS15445 (LQT99_15410) spxO 3133962..3134126 (-) 165 WP_007410067.1 anti-adapter protein SpxO -
  LQT99_RS15450 (LQT99_15415) - 3134305..3135180 (+) 876 WP_017418948.1 TetR/AcrR family transcriptional regulator -
  LQT99_RS15455 (LQT99_15420) fumC 3135217..3136605 (-) 1389 WP_032876589.1 class II fumarate hydratase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 47986.45 Da        Isoelectric Point: 4.9330

>NTDB_id=547182 LQT99_RS15430 WP_032876597.1 3130266..3131627(-) (htrA) [Bacillus amyloliquefaciens strain bm]
MNDHRDDGRSRDQSDLSHTEQNRNEQQRISHQEPELLEEPVSKEAENETAAGTEFEKTAAVKKEKKRRAAWLSPVLGGII
GGGLVLGIVPNLPSEQHKTEAVSDTKQVQSSNFTSTPLKNTSSVADMVEDLEPAIVGVSNYQASQSSQFGLDGGSSSETE
SGTGSGVIFKKDGEKAYIITNNHVVEGANKLSVTLYNGKTETAKLVGKDAISDLAVLEISSSNVKKAASFGDSSKLRIAD
KVIAIGNPLGQQFSGTVTQGVISGLNRTVDADTSQGTVEMNVIQTDAAINPGNSGGPLINSSGQVIGINSMKVSENGVES
LGFAIPSNDVEPIVDQLLAKGKVERPFLGVQMIDMSQVPETYQENTLGLFGDQLSKGVYVKEVQSGSPAAKAGIKSNDVI
VQLNGKDVGSSADIRQILYNQLKIGDKTTVQVLRNGSKKTLNVTLTKQTESAS

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=547182 LQT99_RS15430 WP_032876597.1 3130266..3131627(-) (htrA) [Bacillus amyloliquefaciens strain bm]
ATGAATGATCATCGAGATGACGGCAGAAGCCGCGATCAGTCAGATCTTTCACATACGGAACAAAACAGAAATGAACAGCA
GCGGATCAGCCATCAGGAGCCCGAGCTGCTTGAAGAGCCCGTCTCGAAAGAAGCGGAAAACGAGACGGCGGCCGGTACGG
AATTTGAAAAAACGGCTGCCGTGAAAAAAGAAAAAAAACGGAGAGCTGCTTGGCTGAGCCCGGTTTTAGGCGGCATTATC
GGCGGCGGCCTCGTGCTTGGCATTGTGCCGAACCTGCCGAGTGAGCAGCATAAGACAGAAGCCGTTTCTGATACGAAACA
AGTTCAGTCTTCGAATTTTACGTCAACGCCTTTGAAAAATACCTCAAGCGTAGCGGATATGGTGGAAGATTTGGAGCCCG
CGATTGTGGGAGTGTCCAACTACCAAGCTTCGCAAAGCAGCCAGTTCGGACTTGACGGCGGTTCAAGCTCTGAAACGGAG
AGCGGCACGGGATCAGGCGTCATCTTCAAAAAAGACGGCGAAAAAGCGTACATCATTACAAACAACCATGTCGTAGAAGG
GGCGAACAAACTGTCGGTCACTCTTTACAATGGGAAAACCGAAACGGCAAAGCTTGTCGGAAAGGATGCCATCAGTGACT
TGGCCGTATTGGAAATCAGCTCGTCCAATGTCAAAAAAGCGGCCAGCTTCGGGGATTCCTCCAAGCTCCGCATTGCCGAT
AAAGTGATTGCCATCGGCAACCCGCTCGGCCAGCAGTTTTCCGGCACCGTCACACAAGGTGTCATCAGCGGGCTGAACAG
AACGGTAGACGCCGATACATCCCAAGGCACGGTGGAAATGAACGTGATTCAGACGGATGCGGCGATTAACCCCGGAAACA
GCGGCGGCCCGTTAATCAACTCAAGCGGCCAGGTCATCGGGATCAACAGCATGAAAGTCAGTGAAAACGGCGTGGAGTCA
CTCGGCTTTGCCATTCCGAGCAATGATGTAGAACCGATAGTCGACCAGCTCCTTGCAAAAGGAAAAGTCGAGCGCCCATT
TTTAGGTGTGCAGATGATTGACATGTCGCAAGTGCCGGAAACCTATCAGGAAAACACGCTCGGACTGTTCGGCGACCAGC
TGTCTAAGGGTGTTTACGTAAAAGAAGTGCAATCCGGCTCACCGGCTGCGAAAGCGGGCATTAAATCCAATGACGTCATT
GTACAATTGAACGGCAAAGATGTCGGCAGCAGCGCCGATATCAGACAGATCCTATATAACCAGCTGAAAATCGGCGATAA
AACGACTGTTCAAGTGCTCAGAAACGGAAGCAAAAAGACGCTGAACGTCACATTAACGAAACAAACCGAAAGCGCAAGCT
GA

Domains

Predicted by InterProScan.

Peptidase family M50 (Peptidase_M50)

(372-451)

Trypsin-like peptidase domain (Trypsin_2)

(164-308)

PDZ domain (PDZ_2)

(346-445)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

41.414

87.417

0.362