Detailed information NTG0547168

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: J0X00_RS18395
• Genome accession: NZ_CP071708
• Coordinates: 2668557..2670002 (-)
• Length: 481 a.a.
• NCBI ID: WP_218563205.1
• Uniprot ID: -
• Organism: Vibrio sp. ABG19
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2663557..2675002

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J0X00_RS18370 (J0X00_18350)	-	2664463..2664822 (-)	360	WP_348984827.1	hypothetical protein	-
J0X00_RS18375 (J0X00_18355)	-	2665005..2665886 (-)	882	WP_282477416.1	AEC family transporter	-
J0X00_RS18380 (J0X00_18360)	cdd	2666207..2667097 (-)	891	WP_282477417.1	cytidine deaminase	-
J0X00_RS18385 (J0X00_18365)	-	2667317..2667997 (-)	681	WP_136484036.1	CidB/LrgB family autolysis modulator	-
J0X00_RS18390 (J0X00_18370)	-	2667988..2668362 (-)	375	WP_218563206.1	CidA/LrgA family protein	-
J0X00_RS18395 (J0X00_18375)	sbcB	2668557..2670002 (-)	1446	WP_218563205.1	exodeoxyribonuclease I	Machinery gene
J0X00_RS18400 (J0X00_18380)	-	2670425..2672047 (+)	1623	WP_282477418.1	methyl-accepting chemotaxis protein	-
J0X00_RS18405 (J0X00_18385)	-	2672323..2673372 (+)	1050	WP_136484032.1	NAD(P)-dependent alcohol dehydrogenase	-
J0X00_RS18410 (J0X00_18390)	-	2673575..2674951 (-)	1377	WP_136484031.1	L-cystine transporter	-

Sequence

Protein

• Length: 481 a.a.
• Molecular weight: 55473.71 Da
• Isoelectric Point: 5.4304

>NTDB_id=547168 J0X00_RS18395 WP_218563205.1 2668557..2670002(-) (sbcB) [Vibrio sp. ABG19]
MKDTAPHQQQDHQPTFFFFDYETWGTSPAKDRPSQFAGVRTDKDFNIIGEPLVIYCQLPSDYLPGPEAALITGITPQKAM
SQGLPEPEFIARIHQELSTPNTTSLGYNSIRFDDEVTRYTCYRNFFDPYAWSWQNGNSRWDLLDVMRACHALRPQGIEWP
ENEDGFTSFKLEHLSKANGIEHENAHDAMADVIATIELAKKVKAAQPKLFDYFYSMRTKRKLNELIDIVNMTPLMHVSGM
LGRECQYTSWVVPVAWHPTNQNAAIVVDLAKDPQPLLDLDVDALHARMYTRHDELGPDELPVPVKLIHLNKCPILAPAKT
LTAENADQIGIDRQQCLANLALIRQHPEIREKLIGLFNIEREFDNNHDVDTQLYNGFFSPTDKASMDIIRSTNPEFLGEL
GITFSDPRIEPLLFRYRARHYPWTLNESEQRRWNAHCREYFETHLPDYMLNLENLVHEHESDSKKIAILKSVYQYVEKLA
S

Nucleotide

• Length: 1446 bp

>NTDB_id=547168 J0X00_RS18395 WP_218563205.1 2668557..2670002(-) (sbcB) [Vibrio sp. ABG19]
GTGAAAGACACCGCACCCCACCAGCAGCAAGATCATCAACCGACATTCTTCTTTTTCGACTACGAAACCTGGGGCACCAG
TCCGGCGAAAGACAGACCAAGCCAGTTTGCTGGCGTACGTACCGATAAAGATTTCAATATCATTGGTGAACCACTGGTGA
TTTACTGTCAGTTACCCAGTGATTACCTGCCTGGTCCGGAAGCGGCGCTGATCACGGGCATCACTCCACAGAAAGCAATG
TCACAAGGCCTGCCTGAACCTGAATTTATTGCCCGTATCCATCAGGAACTGTCGACCCCCAACACGACCAGTCTGGGCTA
TAACAGCATTCGTTTTGATGACGAGGTAACCCGTTACACCTGCTACCGCAACTTCTTTGACCCTTATGCCTGGAGCTGGC
AAAACGGTAATTCACGCTGGGATCTGCTGGATGTAATGCGAGCCTGTCATGCTCTTCGTCCTCAGGGTATAGAATGGCCG
GAGAATGAAGACGGTTTCACCAGCTTTAAGCTTGAGCACTTATCCAAAGCCAACGGTATCGAGCATGAGAACGCCCACGA
TGCAATGGCAGACGTTATCGCGACTATCGAGCTGGCTAAGAAAGTGAAAGCCGCCCAACCCAAACTGTTTGATTATTTCT
ACTCGATGCGAACCAAGCGCAAGCTGAATGAACTGATCGACATCGTTAATATGACGCCGCTGATGCATGTTTCCGGCATG
CTGGGACGTGAGTGCCAGTATACCAGTTGGGTCGTCCCCGTTGCCTGGCATCCGACTAACCAGAACGCCGCCATCGTTGT
TGATCTGGCCAAAGATCCACAGCCACTGCTCGACTTAGATGTCGATGCTCTGCACGCCCGTATGTATACACGACACGATG
AACTGGGCCCGGATGAACTGCCGGTACCGGTCAAATTGATTCATCTGAATAAATGTCCGATTCTGGCGCCGGCCAAAACC
CTGACGGCAGAAAATGCCGATCAGATTGGGATTGATCGTCAGCAGTGTCTGGCTAATCTGGCACTGATTCGTCAGCATCC
GGAAATCAGGGAAAAACTGATTGGCCTGTTTAATATTGAGCGCGAATTCGATAACAATCACGATGTGGATACCCAGCTTT
ACAATGGTTTCTTCTCACCCACCGACAAAGCGTCGATGGATATCATCCGCTCAACGAACCCTGAGTTTCTGGGAGAGCTG
GGCATCACATTCAGTGACCCGAGAATTGAACCTTTGCTGTTCCGTTACCGTGCCCGCCACTACCCATGGACACTAAACGA
AAGCGAACAGCGTCGCTGGAACGCACATTGCCGGGAGTACTTTGAAACTCATCTGCCCGACTATATGCTGAACCTGGAAA
ACTTAGTTCACGAACATGAGAGTGACAGCAAAAAAATAGCCATATTAAAATCTGTCTATCAATATGTAGAAAAACTAGCC
AGTTAG

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (18-198)

• Exonuclease C-terminal (Exonuc_X-T_C) (217-477)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	81.992	98.129	0.805