Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   J0X00_RS16620 Genome accession   NZ_CP071708
Coordinates   2247614..2248978 (+) Length   454 a.a.
NCBI ID   WP_282478312.1    Uniprot ID   -
Organism   Vibrio sp. ABG19     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2242614..2253978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0X00_RS16600 (J0X00_16585) - 2242977..2243180 (-) 204 Protein_1949 integrase arm-type DNA-binding domain-containing protein -
  J0X00_RS16610 (J0X00_16595) uvrB 2243999..2246029 (+) 2031 WP_282477246.1 excinuclease ABC subunit UvrB -
  J0X00_RS16615 (J0X00_16600) - 2246131..2247324 (+) 1194 WP_282476786.1 ISL3 family transposase -
  J0X00_RS16620 (J0X00_16605) luxO 2247614..2248978 (+) 1365 WP_282478312.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  J0X00_RS16625 (J0X00_16610) luxU 2248985..2249323 (+) 339 WP_136484353.1 quorum-sensing phosphorelay protein LuxU -
  J0X00_RS16630 (J0X00_16615) - 2249544..2250449 (-) 906 WP_136484352.1 YvcK family protein -
  J0X00_RS16635 (J0X00_16620) moaA 2250780..2251769 (+) 990 WP_136484351.1 GTP 3',8-cyclase MoaA -
  J0X00_RS16640 (J0X00_16625) moaB 2251878..2252390 (+) 513 WP_136484350.1 molybdenum cofactor biosynthesis protein B -
  J0X00_RS16645 (J0X00_16630) moaC 2252402..2252881 (+) 480 WP_136484349.1 cyclic pyranopterin monophosphate synthase MoaC -
  J0X00_RS16650 (J0X00_16635) moaD 2252878..2253123 (+) 246 WP_136484348.1 molybdopterin synthase sulfur carrier subunit -
  J0X00_RS16655 (J0X00_16640) moaE 2253125..2253580 (+) 456 WP_282477247.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 50544.57 Da        Isoelectric Point: 5.0858

>NTDB_id=547160 J0X00_RS16620 WP_282478312.1 2247614..2248978(+) (luxO) [Vibrio sp. ABG19]
MVEDTASVAALYRSYLTPLEIDINIVGTGRDAIESIEKRTPDLILLDLRLPDMTGMDVLHEVKKQSPDVPVIFMTAHGSI
DTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNDTDSTNQNYQGFIGSSHNMQAVYRTIDSAASSKASIFITG
ESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGGTLFLDELCEMDLDL
QTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRERGDDVIEIAYSLLGY
MSKEEGKGFVRLAPGVVERFRKYEWPGNVRQLQNVLRNVVVLNEGSEIALEMLPPPLSQPIESENILPNVGQGRISVHEI
FPLWMTEKQAIENAIEACDGNIPRAAGYLDVSPSTIYRKLQTWNEKEQEKENEK

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=547160 J0X00_RS16620 WP_282478312.1 2247614..2248978(+) (luxO) [Vibrio sp. ABG19]
ATGGTCGAAGACACGGCTTCGGTCGCGGCGCTGTATCGTTCTTATCTGACTCCTCTGGAGATCGATATCAATATTGTCGG
TACCGGGCGTGACGCGATCGAAAGTATCGAGAAACGGACTCCGGATCTGATCCTGCTCGATTTACGCCTGCCAGATATGA
CGGGTATGGATGTGCTGCACGAAGTGAAGAAGCAATCGCCGGATGTCCCGGTGATTTTCATGACAGCGCACGGCTCTATC
GATACCGCAGTGGAAGCGATGCGCCACGGTGCTCAGGATTTCCTTATCAAACCGTGTGAAGCGGACCGTTTGCGTGTCAC
AGTAAATAATGCGATCCGCAAGGCCAGCAAGCTTAAAAATGACACCGACAGCACCAATCAGAACTACCAGGGCTTCATCG
GCAGCAGTCACAATATGCAAGCGGTCTATCGCACGATTGACTCGGCTGCGAGCAGTAAAGCCAGTATCTTTATCACCGGT
GAAAGCGGTACAGGTAAAGAAGTGTGTGCCGAAGCCATCCATGCCGCCAGCAAGCGCGGTGACAAGCCGTTCATCGCGAT
TAACTGTGCTGCGATTCCAAAAGACTTGATCGAAAGTGAGTTGTTCGGCCACGTAAAAGGTGCCTTTACCGGTGCTGCCA
CCGATCGTCAGGGTGCGGCTGAACTGGCAGACGGCGGCACTCTGTTTTTGGATGAATTGTGTGAAATGGATCTGGACTTA
CAGACCAAGCTGTTGCGCTTTATCCAGACCGGTACCTTTCAGAAAGTCGGTTCATCGAAAATGAAGAGTGTGGATGTCCG
TTTTGTCTGTGCAACCAACCGCGACCCCTGGAAAGAGGTGCAGGAAGGACGTTTTCGTGAAGACTTATACTACCGTTTGT
ACGTGATTCCGCTCCATTTACCGCCACTGCGTGAGCGTGGTGACGATGTGATTGAAATTGCTTATTCCCTGCTGGGCTAC
ATGTCTAAAGAAGAAGGCAAAGGCTTTGTCCGCCTGGCTCCGGGGGTGGTCGAACGGTTCAGAAAGTACGAGTGGCCGGG
CAATGTGCGCCAGCTGCAGAACGTGCTGCGTAATGTGGTGGTATTGAATGAAGGCAGTGAGATCGCGCTTGAAATGCTGC
CACCGCCGCTGAGTCAGCCGATTGAATCGGAAAATATCTTGCCAAATGTTGGTCAGGGTCGCATTTCTGTGCATGAAATT
TTCCCATTATGGATGACAGAGAAACAGGCGATTGAAAACGCTATCGAAGCGTGTGATGGTAATATTCCGCGTGCGGCGGG
TTATTTGGATGTTAGTCCATCGACCATTTATCGTAAGCTGCAGACCTGGAACGAAAAAGAACAAGAAAAGGAAAATGAAA
AGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(2-108)

Bacterial regulatory protein, Fis family (HTH_8)

(403-441)

Sigma-54 interaction domain (Sigma54_activat)

(133-298)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

89.933

98.458

0.885