Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   J0X00_RS14550 Genome accession   NZ_CP071708
Coordinates   1788308..1788826 (+) Length   172 a.a.
NCBI ID   WP_136483322.1    Uniprot ID   -
Organism   Vibrio sp. ABG19     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1783308..1793826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0X00_RS14540 (J0X00_14530) gshA 1786095..1787660 (+) 1566 WP_282477085.1 glutamate--cysteine ligase -
  J0X00_RS14545 (J0X00_14535) - 1787677..1788282 (+) 606 WP_136483321.1 hypothetical protein -
  J0X00_RS14550 (J0X00_14540) luxS 1788308..1788826 (+) 519 WP_136483322.1 S-ribosylhomocysteine lyase Regulator
  J0X00_RS14555 (J0X00_14545) - 1788964..1790238 (-) 1275 WP_218562308.1 CNNM domain-containing protein -
  J0X00_RS14560 (J0X00_14550) - 1790371..1791165 (-) 795 WP_136483324.1 inner membrane protein YpjD -
  J0X00_RS14565 (J0X00_14555) ffh 1791493..1792872 (+) 1380 WP_136483325.1 signal recognition particle protein -
  J0X00_RS14570 (J0X00_14560) rpsP 1793175..1793423 (+) 249 WP_136483326.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18800.60 Da        Isoelectric Point: 4.8114

>NTDB_id=547158 J0X00_RS14550 WP_136483322.1 1788308..1788826(+) (luxS) [Vibrio sp. ABG19]
MPLLDSFTVDHTRMSAPAVRVAKTMQTPKGDTITVFDLRFTLPNQDILSERGIHTLEHLYAGFMRAHLNGANVEIIDISP
MGCRTGFYMSLIGAPSEDQVASAWLAAMQDVLKVEGQDKIPELNEYQCGTAAMHSLTEAKAIAEKVIAAGISVNKNDELA
LPESMLQELKVN

Nucleotide


Download         Length: 519 bp        

>NTDB_id=547158 J0X00_RS14550 WP_136483322.1 1788308..1788826(+) (luxS) [Vibrio sp. ABG19]
ATGCCATTATTAGACAGCTTTACCGTAGACCACACTCGCATGAGTGCGCCGGCGGTACGTGTGGCCAAGACCATGCAAAC
ACCAAAGGGCGATACCATCACGGTATTTGACCTGCGTTTCACCCTGCCGAATCAGGATATTCTGTCAGAGCGTGGTATCC
ATACGCTGGAGCACCTGTATGCCGGCTTTATGCGTGCCCACCTTAATGGGGCTAACGTCGAAATCATCGATATCTCGCCA
ATGGGCTGTCGCACGGGTTTCTATATGAGCCTGATTGGTGCGCCAAGCGAAGACCAGGTTGCAAGCGCGTGGCTGGCAGC
GATGCAGGATGTACTGAAAGTCGAAGGTCAGGATAAAATCCCTGAGCTGAACGAGTACCAGTGCGGTACCGCAGCGATGC
ACTCACTGACCGAAGCGAAAGCGATTGCAGAGAAGGTGATTGCGGCCGGTATTTCAGTCAACAAGAACGACGAACTGGCC
TTGCCGGAGTCGATGCTGCAAGAGCTGAAAGTGAACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

89.535

100

0.895