Detailed information NTG0547155

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: J0X00_RS14430
• Genome accession: NZ_CP071708
• Coordinates: 1765840..1766832 (+)
• Length: 330 a.a.
• NCBI ID: WP_282477079.1
• Uniprot ID: -
• Organism: Vibrio sp. ABG19
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1760840..1771832

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J0X00_RS14400 (J0X00_14390)	ispD	1760902..1761597 (+)	696	WP_136483301.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
J0X00_RS14405 (J0X00_14395)	ispF	1761739..1762215 (+)	477	WP_136483302.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
J0X00_RS14410 (J0X00_14400)	truD	1762262..1763308 (+)	1047	WP_218562317.1	tRNA pseudouridine(13) synthase TruD	-
J0X00_RS14415 (J0X00_14405)	surE	1763374..1764153 (+)	780	WP_136483304.1	5'/3'-nucleotidase SurE	-
J0X00_RS14420 (J0X00_14410)	-	1764146..1764772 (+)	627	WP_136483305.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
J0X00_RS14425 (J0X00_14415)	-	1764772..1765770 (+)	999	WP_282477078.1	peptidoglycan DD-metalloendopeptidase family protein	-
J0X00_RS14430 (J0X00_14420)	rpoS	1765840..1766832 (+)	993	WP_282477079.1	RNA polymerase sigma factor RpoS	Regulator
J0X00_RS14435 (J0X00_14425)	mutS	1767108..1769669 (-)	2562	WP_282477080.1	DNA mismatch repair protein MutS	-
J0X00_RS14440 (J0X00_14430)	pncC	1769756..1770244 (+)	489	WP_218562314.1	nicotinamide-nucleotide amidase	-
J0X00_RS14445 (J0X00_14435)	recA	1770416..1771465 (+)	1050	WP_136483310.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37944.80 Da
• Isoelectric Point: 4.4543

>NTDB_id=547155 J0X00_RS14430 WP_282477079.1 1765840..1766832(+) (rpoS) [Vibrio sp. ABG19]
MSISNTATKVDEEFEFDAEAMNAAEAEEQLTNSKDQSEEIREEFDASTKSLDATQMYLSEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIALELDKPVDDVSKMLRLNERISSVDTPIGGDGDKALLDIIPDINNS
DPEVSTQDDDIRDSLVAWMDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILMKQGLNM
ESLFNVENEQ

Nucleotide

• Length: 993 bp

>NTDB_id=547155 J0X00_RS14430 WP_282477079.1 1765840..1766832(+) (rpoS) [Vibrio sp. ABG19]
ATGAGTATCAGCAATACAGCCACTAAAGTCGACGAAGAGTTTGAATTCGATGCCGAAGCAATGAATGCCGCGGAAGCTGA
AGAACAACTCACTAACAGTAAAGACCAATCTGAAGAGATTCGCGAAGAATTTGACGCATCGACGAAGAGTCTGGATGCCA
CTCAGATGTATCTGAGTGAGATTGGTTTCTCACCACTTTTAACCGCCGAAGAAGAAGTTTTGTATGCCCGCCGTGCTCTG
CGTGGCGATGAAGCGGCACGCAAACGTATGATCGAAAGTAACCTGCGCCTGGTGGTCAAGATCTCACGCCGTTACAGCAA
TCGTGGTCTGGCTCTGCTTGATCTGATTGAAGAAGGCAATCTGGGTCTGATCCGTGCGGTGGAAAAATTTGATCCGGAAC
GCGGCTTCCGTTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATTGAACGTGCGCTGATGAACCAGACCCGTACC
ATTCGTCTGCCGATTCATGTCGTCAAAGAGCTCAACATTTACCTGCGTACTGCGCGTGAACTGTCGCAAAAACTCGATCA
CGAGCCAACGGCAGAAGAGATCGCACTGGAGCTGGATAAACCGGTGGATGATGTCAGCAAAATGCTGCGCCTCAATGAGC
GTATCAGCTCAGTGGATACGCCGATTGGTGGTGACGGCGACAAAGCGCTGCTCGACATTATTCCGGACATCAACAACTCG
GACCCGGAAGTCTCGACTCAGGACGATGACATCCGTGACTCACTGGTTGCCTGGATGGATGAACTGAATCCGAAACAGAA
AGAAGTGCTGGCGCGCCGTTTTGGCCTGCTCGGTTATGAACCTTCTACGCTGGAAGAAGTCGGTCGCGAAATTAACCTGA
CCCGTGAGCGGGTACGTCAGATCCAGGTCGAAGGCCTGCGTCGTCTGCGTGAAATCCTGATGAAACAGGGTCTGAATATG
GAATCGCTGTTTAACGTAGAAAACGAGCAATAA

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	87.087	100	0.879